Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 476 / 9e-169 Protein phosphatase 2C family protein (.1.2) AT3G55050 467 / 2e-165 Protein phosphatase 2C family protein (.1.2) AT3G51370 451 / 5e-159 Protein phosphatase 2C family protein (.1.2) AT5G66080 442 / 2e-155 Protein phosphatase 2C family protein (.1) AT4G38520 440 / 2e-154 Protein phosphatase 2C family protein (.1.2) AT5G02760 437 / 8e-154 Protein phosphatase 2C family protein (.1) AT3G17090 383 / 2e-132 Protein phosphatase 2C family protein (.1.2) AT5G06750 372 / 1e-127 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 354 / 4e-121 Protein phosphatase 2C family protein (.1) AT3G16560 147 / 4e-40 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019893 [exp] 698 / 0 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2) Lus10015047 [exp] 566 / 0 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 564 / 0 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 473 / 1e-167 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 470 / 1e-166 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 468 / 2e-165 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 454 / 3e-160 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 442 / 3e-155 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 441 / 6e-155 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082800 [exp] 484 / 2e-172 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 469 / 3e-166 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 467 / 3e-165 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 461 / 9e-163 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 456 / 5e-161 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 453 / 1e-159 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 449 / 4e-158 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 401 / 2e-139 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 400 / 3e-139 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 392 / 2e-135 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10014024 pacid=23156845 polypeptide=Lus10014024 locus=Lus10014024.g ID=Lus10014024.BGIv1.0 annot-version=v1.0 ATGGGTAAGCCGTGTTGGAGAGGTTGCATGGAGGGTGATGATACAGTGGGGAAGGTGGATGGACTTATGTGGCATAAGGATTTAGGTAGCCACGCTTATG GATATTTCTCTATGGCTGTGATTCAAGCCAATGGTGTGTTGGAAGATTACAGCCAGCTCGAATCTGGACCATTGGGCACTTTCGTCGGAGTCTACGATGG ACATGGAGGGCCTCAAGCTTCCAAATTTGTCAGCAACAATCTCTTCTTCAATCTCAAAAATTTGGTGTCGGAGCAGGGGGGAGTGACCGAGTCAACACTG AAGAAGGCGTTCTCCGCGACAGAAAAGGATTTCCTGTCAATGATTAAAAAGCGGTGGACGAGTACTCCTCAGATTGCATCCTCCGGTTCGTGTTGCCTGG CCGGAGTATTCTGCTACGGAATGCTGTACGTGGCTAATGCCGGAGACTCCAAAGCTGTGTTGGGGAGAGTGGAGATGGGTAGCCATAGAGCTTCAGCGGT CCAGCTGTGCAATGAGCATAACGTGAATATCGAATCCGTTAGGGAAGAGCTCCGTGCTTTGCATCCTGAGGATTCGCAGGTTGTTGTCCTGAAGCATAAG AGTTGGCGAGTCAGGGGCCTCATCCAGGTGTCGAGATCTATCGGAGACGCATACCTGAAGAAGGCAGAGTTCCAGAGAGATCCCCTGCTTCCCAAGTTCA GACTGACTGAGACATTCGAGAAGCCGATACTTAGCTCCGAGCCTGAGGTGACAGTCCACAGGTTTGAACCAGAGGATCGGTTTGTAATTTTCGCTTCCGA TGGCCTATGGGAACAGCTCAGCAACCAGGAAGCAGTTGACATCGTCCAAAGATTCCCACGCAATGGGATTGCGAAGAGGCTAATGAAAGCAGCACTCCAT GAAGCTGCCAGGAAGAGAGAGATGAGATACACAGACCTCCAGAAGATTGATCCAGGAGTTCGAAGACATTTCCACGACGATATAACAGTGATCGTCGTGT TCATAGACTATGATTCGGTCAGTAGGAGTCCTCTCCGACCGAGTTGTGTGCCTTACTCAATCAAAGCAGGCGTCTCCCAACATTGA
AA sequence Show only first row Show all	>Lus10014024 pacid=23156845 polypeptide=Lus10014024 locus=Lus10014024.g ID=Lus10014024.BGIv1.0 annot-version=v1.0 MGKPCWRGCMEGDDTVGKVDGLMWHKDLGSHAYGYFSMAVIQANGVLEDYSQLESGPLGTFVGVYDGHGGPQASKFVSNNLFFNLKNLVSEQGGVTESTL KKAFSATEKDFLSMIKKRWTSTPQIASSGSCCLAGVFCYGMLYVANAGDSKAVLGRVEMGSHRASAVQLCNEHNVNIESVREELRALHPEDSQVVVLKHK SWRVRGLIQVSRSIGDAYLKKAEFQRDPLLPKFRLTETFEKPILSSEPEVTVHRFEPEDRFVIFASDGLWEQLSNQEAVDIVQRFPRNGIAKRLMKAALH EAARKREMRYTDLQKIDPGVRRHFHDDITVIVVFIDYDSVSRSPLRPSCVPYSIKAGVSQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10014024 [exp]	0	1
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	14.7	0.7001
AT5G38060			unknown protein		Lus10009105 [exp]	18.3	0.6900
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	19.4	0.6728
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	24.9	0.6545
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10024315 [exp]	29.8	0.6228
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10019858 [exp]	39.4	0.5647
					Lus10037542 [exp]	45.7	0.5516
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	94.9	0.6099
AT5G56510		APUM12	pumilio 12 (.1)		Lus10018710 [exp]	99.8	0.5670
AT3G11590			unknown protein		Lus10005200 [exp]	106.8	0.5798

Compare expression of checked genes

Lus10014024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.