Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15760 173 / 4e-51 Protein of unknown function (DUF1645) (.1) AT2G26530 91 / 2e-20 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT3G62630 84 / 8e-18 Protein of unknown function (DUF1645) (.1) AT3G27880 42 / 0.0003 Protein of unknown function (DUF1645) (.1) AT1G70420 42 / 0.0005 Protein of unknown function (DUF1645) (.1) AT1G23710 41 / 0.001 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019892 [exp] 585 / 0 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 230 / 4e-73 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 219 / 2e-68 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10032766 [exp] 127 / 3e-33 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10021757 [exp] 120 / 9e-31 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 89 / 6e-20 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 87 / 5e-19 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10020690 [exp] 82 / 5e-17 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 82 / 6e-17 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143500 [exp] 252 / 4e-81 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 247 / 4e-79 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 131 / 5e-35 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.013G010400 [exp] 85 / 5e-18 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 81 / 1e-16 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.002G128500 [exp] 63 / 9e-11 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10014025 pacid=23156784 polypeptide=Lus10014025 locus=Lus10014025.g ID=Lus10014025.BGIv1.0 annot-version=v1.0 ATGGAGGTAGTAATGCCAATACCGCCACCTTCCGCCGCCACTGCAACGGAGTTCAACTTTGACAGCTCTTCCTCTACCCCTTACCTCACCGCTCCTTCCA CCCCTCAACGTTTAGCCACCAACTTCTCTTCCTCTTCCTCCGCCGCCGGCGGCGGCGTTCCTTTCGAGTGGGAAGAGAAGCCCGGAACTCCCAAGAGAAA CGGAACCAGATCCAAGAGTACTGAATTCTATGACGACGACGACGACGAAGATGATTTCGAATTCGATTTCAGCGGCCAGTTGTCCAGGAGCTCTTTGTCC GCCGCCGATGAGCTTTTCTACGGCGGCAAAATCCGGCCGCTGAAACCTCCTCCGGGGTATGAATCCTCCGCCACTTCTCCCCGCTCGCCGAAATCGAATT CGAAATCTTCGAAGAAAAAGGAATTCGATCCTTTCCAGACTGCTATCGACGAGACGCGGAATCGAGACGACAAACAGGAATTGGACCAGCGAGGAAGAGA AAGGAGAGCGATTAGTTCTTCTTCGTCCATCGATTATGATCCTAATTTCAATTCGAACTCTCACGCCGGCGGTCGGCGGGGGATTAGCAGGTCTATGTCG CCTATGAGAGTCTCCGGCGAAATGTTGGTTGATGACGGCGCCACGTCATCGTCAGGGACCACCGGTAAACAGTCGTACGCAGCGGCTTTTCTGTCGGCTA TCTCGTTTGCCAAAGGAGGAAGGCCGTACAAGAAGTGGAAGCTGAGGGATTTGTTGCTGTTCAGGAGCGCTTCGGAAGGGAGGGCGACGAGTTTCCAATC GTCGGAGATCAAGTACGCGGTGCTGTCGAGGAGGTCGGAGTCAACATTGGCGGCGGCAGAGGATGCGAAGAGTTCAAGCTTCCGGTCGACGGAGAGCTTG GGGAGTTCGCGGCGTATGAGGGCGGCGGTGTCAGCGCATGAGATGCATTACACGACGAACAGAGCGGCGGCGGAGGAGATGAGGAGGAAAACTTTCCTGC CGTACAAACAGGGTTTGTTGGGGTGTTTGGGATTCAGTCCGGGAGGGGTCCCTGACATTTCCTGTTCAAGAGGCGTTGGATCTGTGACACGTGGATAA
AA sequence Show only first row Show all	>Lus10014025 pacid=23156784 polypeptide=Lus10014025 locus=Lus10014025.g ID=Lus10014025.BGIv1.0 annot-version=v1.0 MEVVMPIPPPSAATATEFNFDSSSSTPYLTAPSTPQRLATNFSSSSSAAGGGVPFEWEEKPGTPKRNGTRSKSTEFYDDDDDEDDFEFDFSGQLSRSSLS AADELFYGGKIRPLKPPPGYESSATSPRSPKSNSKSSKKKEFDPFQTAIDETRNRDDKQELDQRGRERRAISSSSSIDYDPNFNSNSHAGGRRGISRSMS PMRVSGEMLVDDGATSSSGTTGKQSYAAAFLSAISFAKGGRPYKKWKLRDLLLFRSASEGRATSFQSSEIKYAVLSRRSESTLAAAEDAKSSSFRSTESL GSSRRMRAAVSAHEMHYTTNRAAAEEMRRKTFLPYKQGLLGCLGFSPGGVPDISCSRGVGSVTRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15760			Protein of unknown function (D...		Lus10014025 [exp]	0	1
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	2.0	0.9795
AT1G74360			Leucine-rich repeat protein ki...		Lus10003477 [exp]	6.5	0.9656
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	6.9	0.9745
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	10.4	0.9701
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	10.6	0.9746
AT4G02920			unknown protein		Lus10008160 [exp]	13.6	0.9742
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	14.8	0.9742
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	15.7	0.9716
					Lus10000858 [exp]	17.0	0.9723
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	17.7	0.9709

Compare expression of checked genes

Lus10014025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.