Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56570 257 / 1e-82 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 194 / 5e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 194 / 6e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 194 / 4e-57 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 188 / 4e-55 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G57430 188 / 7e-55 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 185 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 184 / 3e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 183 / 5e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 185 / 7e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019891 [exp] 461 / 5e-162 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 192 / 4e-57 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 190 / 1e-56 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022702 [exp] 185 / 2e-55 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000213 [exp] 187 / 3e-55 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 186 / 2e-54 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 186 / 3e-54 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000597 [exp] 179 / 3e-54 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 185 / 6e-54 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006700 [exp] 304 / 1e-100 AT1G56570 732 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G010900 [exp] 256 / 2e-82 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 192 / 6e-57 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 192 / 2e-56 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 189 / 4e-56 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 186 / 5e-56 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G082200 [exp] 186 / 6e-56 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 186 / 2e-55 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 189 / 3e-55 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 189 / 3e-55 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014026 pacid=23156858 polypeptide=Lus10014026 locus=Lus10014026.g ID=Lus10014026.BGIv1.0 annot-version=v1.0 ATGATGATTGGATATGGGGCTCATGGATATGGTATAGAGGCTGTAGCGCTGTTTGAGGAGATGGTGAGGTCAGATGTCAGGCCTGATCAGATTGTGTTTA TGGCGGTTTTGAGTTCTTGTAGTCATGCTGGACTAGTCGACCAGGGCCTGAGGTATTTCAATACTATGATTGGTCACTACAAAATTAGGCCAAATCAGGA AATTTATGGGTGTGTTGTGGATTTGTTGGGCAGAGCTGGGAGAGTTGAGGAGGCCTATCAGCTGATACACAGCATGCCATTTAAAGCTGACGAATCTGTT TGGGGTGCGCTCCTTAGCGCCTGTAAAACCCATAACCTTCTAGATTTGGGTAAATTAGCTGCCTTGAGGGTGTTGGATTTGCAGCCAGATATGGTCAGTG CTTATGTCATGCTGTCAAATATTTATGCAGCCGAAGGTAAATGGGACGAGTTTGCGAGGACAAGGAGATTGATGAAGGAAATTGTGAGCAAGAAGGTTTC GGGGAAGAGTTGGATTGAAGTAAGAAACGAAGTATACAGTTTTGTCGTGGATGATACAGTTGGCATTCATATGGAGTTGGCACATCGAACTCTAGGTCTG TTATGGCAGCACATGAAAGAAAAAGATAATATGGATGAAGACGACTGCTTAATAGATGCCATTGCAAATGGGGCTTGA
AA sequence Show only first row Show all	>Lus10014026 pacid=23156858 polypeptide=Lus10014026 locus=Lus10014026.g ID=Lus10014026.BGIv1.0 annot-version=v1.0 MMIGYGAHGYGIEAVALFEEMVRSDVRPDQIVFMAVLSSCSHAGLVDQGLRYFNTMIGHYKIRPNQEIYGCVVDLLGRAGRVEEAYQLIHSMPFKADESV WGALLSACKTHNLLDLGKLAALRVLDLQPDMVSAYVMLSNIYAAEGKWDEFARTRRLMKEIVSKKVSGKSWIEVRNEVYSFVVDDTVGIHMELAHRTLGL LWQHMKEKDNMDEDDCLIDAIANGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	3.5	0.7822
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	6.2	0.7735
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	8.2	0.7557
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	12.5	0.6711
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	20.4	0.6988
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	22.8	0.7528
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	22.8	0.7598
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	27.7	0.6872
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	28.6	0.6335
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	31.9	0.7097

Compare expression of checked genes

Lus10014026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.