Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56570 399 / 2e-135 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 191 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 189 / 2e-54 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 181 / 6e-51 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 181 / 7e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65570 179 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G25270 174 / 9e-50 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 177 / 1e-49 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G25970 176 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 176 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019891 [exp] 636 / 0 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 200 / 2e-58 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 195 / 2e-56 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 189 / 2e-53 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 181 / 1e-51 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 182 / 5e-51 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 182 / 1e-50 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015414 [exp] 180 / 3e-50 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031714 [exp] 177 / 8e-50 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006700 [exp] 446 / 4e-154 AT1G56570 732 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G010900 [exp] 433 / 2e-149 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G006800 [exp] 192 / 2e-55 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G151200 [exp] 189 / 8e-54 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 189 / 8e-54 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 189 / 9e-54 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 186 / 1e-52 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 186 / 2e-52 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 185 / 2e-52 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G170300 [exp] 182 / 3e-52 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014027 pacid=23156846 polypeptide=Lus10014027 locus=Lus10014027.g ID=Lus10014027.BGIv1.0 annot-version=v1.0 ATGCGATATCCACGGCAACTTTCGGTGCTTCGCTCGCAACCGCTATCAACGTTCGCCGATGACTACCTACAATGGACCCAAGCCAACCCTACGGTGTTTG CACCAAAGGGTCCCTCAGTATTGGCCACAAACCTCATCAAGTCATACTTCGAAAACGGCTCAGTTGACGATGCTCACGACCTGTTCGACGAAATGCCTGA CAGAGACGTTGTCGCCTGGACGTCCATGGTCGCTGGCTACGCTTCCCGCGGCCAAAACTGGCGGGCTTGGAGGGTTTTCTGCGACATGGTTAAGAATGGG ATTGTGCCCAATGCCTTCACCTTTTCCAGCGTTTTGAAGGTTTGTAAAGGTATGAAGGATGTTTCTCGTGGCAGCTTAGTTCATGGTTCGGTCATAAAGC GTGGGTTGGAAGGGTTCATTTACGTGGACAATTCGCTCATGGATATGTATGCTACTTGTTGTGCTAGCATGAGAGATGCTTGCTTGGTTTTTCGTCATAT TAGAGAAAAGAATGCCGTCTCATGGACTACCTTGATTACTGGTTTCACTCACAGAGGACGTTCCCATAGTGCCCTCCGAATTTTTAAACAAATGTTGCAT GAGAAACCGGAGCTTAACCCTTACAGCCTTTCTATTGCTGTTAGAGCTTGTGCTTCGACCGGATCGCAAAACAGTGGCAGACAAATACAGGCGGCAGCGA TCAAACATGGGTTTGAATCTAACCTTCCTGTCATGAACTCTGTACTAGATATGTACTGTAGATTTGTTTGTTTACCAGAGGCAAACCAGTGCTTCAATCA AATGAGTGAAAAAGATTTGATCACGTGGAATACTCTAATATCAGGATATGAAAAGTGGGATTCCAAGCTGTCCCTCTCTATATTCTCCAGAATGGAATCA GAAGGTTTTACTCCAAATTGCTTCACGTTTACCAGTGTAACAGCAGCCTGTGCTAACCTGGCGGTCCTGAGTTGTGGGCAACAGGTTCATGGAGGAATTA TTCGCAGAGGAATTAATAGTAACTTGCTAGTAACTTGGCATTGGCTAATGCTTTGA
AA sequence Show only first row Show all	>Lus10014027 pacid=23156846 polypeptide=Lus10014027 locus=Lus10014027.g ID=Lus10014027.BGIv1.0 annot-version=v1.0 MRYPRQLSVLRSQPLSTFADDYLQWTQANPTVFAPKGPSVLATNLIKSYFENGSVDDAHDLFDEMPDRDVVAWTSMVAGYASRGQNWRAWRVFCDMVKNG IVPNAFTFSSVLKVCKGMKDVSRGSLVHGSVIKRGLEGFIYVDNSLMDMYATCCASMRDACLVFRHIREKNAVSWTTLITGFTHRGRSHSALRIFKQMLH EKPELNPYSLSIAVRACASTGSQNSGRQIQAAAIKHGFESNLPVMNSVLDMYCRFVCLPEANQCFNQMSEKDLITWNTLISGYEKWDSKLSLSIFSRMES EGFTPNCFTFTSVTAACANLAVLSCGQQVHGGIIRRGINSNLLVTWHWLML

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	0	1
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	2.0	0.9179
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	2.4	0.9113
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	3.2	0.9257
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	3.5	0.8949
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	4.9	0.9091
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	5.3	0.9087
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	6.9	0.9041
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	7.3	0.8999
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10003383 [exp]	9.2	0.8926
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	14.0	0.8824

Compare expression of checked genes

Lus10014027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.