Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 403 / 6e-140 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 391 / 4e-135 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 357 / 7e-122 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 350 / 2e-119 ATRBP47C RNA-binding protein 47C (.1.2) AT4G27000 320 / 9e-108 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 317 / 1e-106 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 314 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 311 / 2e-104 ATRBP45A RNA-binding protein 45A (.1) AT1G54080 125 / 1e-32 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 125 / 2e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019889 [exp] 505 / 0 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10012071 [exp] 452 / 6e-161 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10012070 [exp] 452 / 1e-159 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10027911 [exp] 421 / 6e-149 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1) Lus10021754 [exp] 385 / 6e-133 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 338 / 1e-114 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 336 / 6e-114 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 327 / 7e-111 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 228 / 3e-71 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105300 [exp] 447 / 2e-157 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 446 / 8e-157 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 399 / 2e-138 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 391 / 3e-135 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 342 / 2e-116 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G017200 [exp] 336 / 4e-114 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G423400 [exp] 329 / 5e-111 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 327 / 1e-110 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G139300 [exp] 123 / 8e-32 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 119 / 2e-30 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014029 pacid=23156854 polypeptide=Lus10014029 locus=Lus10014029.g ID=Lus10014029.BGIv1.0 annot-version=v1.0 ATGGACGAGACTTATGTCCACAGCTGCTTTTCTCACACTGGCGAGGTCTCTTCTGTTAAGGTGATAAGGAACAAGCAAACTGGTCAGTCAGAAGGGTATG GTTTTGTTGAGTTCTATTCACACGCTACAGCAGAGAAAGTCCTACAAACCTACAATGGCTGTGCCATGCCAAATTCAGATCAGCCATTCCGTCTGAACTG GGCAAGCTTTGCTGGTGATAGACGAGCTGAACCAAATTCTGATCTGTCAATATTTGTTGGAGATTTGGCAGCGGATGTGACTGATTCTATGTTGCAGGAG ACATTCTCCAGCAAATATGCATCCGTTAAGGGAGCAAAAGTAGTTATTGATTCCAATACTGGAAGGTCGAAAGGTTACGGTTTTGTTAGGTTCAGCGATG AAGGTGAGAGGTCTAGAGCCATGGTGGAGATGAACGGTGTTTATTGTTCTTCGAGGCCCATGCGAATAGGCGTTGCGACTCCCAAAAAGGCTTCTCCATA TCAGCAACAATATGCTTCACAAGCTATGGTTTTGGCTGGTGGTGGGCATGGATCAAATGGCTCTTCTGCACAGGGTGCTCATGGTGATGGCGAGTCTACT AATACGACTATATTTGTTGGAGGAATTGACTCTGATGTCAGCGAGGAAGATCTCAGGCAGCCATTTAGCCAGTTTGGTGATGTTGTGTCGGTGAAAATAC CTGTAGGGAAAGGCTGCGGATTTGTGCAATTTGCCAGCAGAAAAAGTGCCGAAGAGGCACTTGACGGTTTGAATGGCACTCTGATTGGCAAACAGACAGT TAGACTTTCATGGGGTCGCAGTCCTGCAAACAAGCAGTGGAGAGGGGATAATGGAAACCAGTGGAGTGGAGGTGGCTACAATGGTGGGCAAGGCTACGGT GGTGGATATGGATACAATGCATCGTCAAACCAGGATGCAGGCATGTACGCTGCAGCTGCAACCAATGGAGCTTCGTAG
AA sequence Show only first row Show all	>Lus10014029 pacid=23156854 polypeptide=Lus10014029 locus=Lus10014029.g ID=Lus10014029.BGIv1.0 annot-version=v1.0 MDETYVHSCFSHTGEVSSVKVIRNKQTGQSEGYGFVEFYSHATAEKVLQTYNGCAMPNSDQPFRLNWASFAGDRRAEPNSDLSIFVGDLAADVTDSMLQE TFSSKYASVKGAKVVIDSNTGRSKGYGFVRFSDEGERSRAMVEMNGVYCSSRPMRIGVATPKKASPYQQQYASQAMVLAGGGHGSNGSSAQGAHGDGEST NTTIFVGGIDSDVSEEDLRQPFSQFGDVVSVKIPVGKGCGFVQFASRKSAEEALDGLNGTLIGKQTVRLSWGRSPANKQWRGDNGNQWSGGGYNGGQGYG GGYGYNASSNQDAGMYAAAATNGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	0	1
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	1.0	0.9538
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	2.0	0.9205
AT5G22720			F-box/RNI-like superfamily pro...		Lus10024696 [exp]	2.2	0.8747
AT4G04614			unknown protein		Lus10014685 [exp]	3.5	0.8555
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	4.6	0.8452
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	6.0	0.8976
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	9.4	0.8600
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	12.0	0.8369
AT5G53045			unknown protein		Lus10017942 [exp]	14.8	0.8584
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	16.5	0.8796

Compare expression of checked genes

Lus10014029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.