Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04700 343 / 1e-107 Ankyrin repeat family protein (.1) AT5G04680 321 / 3e-99 Ankyrin repeat family protein (.1) AT5G04730 288 / 1e-87 Ankyrin-repeat containing protein (.1) AT3G18670 261 / 8e-78 Ankyrin repeat family protein (.1) AT5G04690 243 / 2e-70 Ankyrin repeat family protein (.1) AT5G35810 198 / 6e-57 Ankyrin repeat family protein (.1) AT3G54070 169 / 2e-44 Ankyrin repeat family protein (.1) AT3G12360 81 / 1e-15 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 80 / 2e-15 Ankyrin repeat family protein (.1) AT4G03500 79 / 6e-15 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019887 [exp] 869 / 0 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10019888 [exp] 749 / 0 AT3G18670 116 / 2e-40 Ankyrin repeat family protein (.1) Lus10027721 [exp] 403 / 3e-131 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10038357 [exp] 258 / 2e-75 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10035567 [exp] 216 / 2e-62 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 189 / 1e-56 ND 146 / 2e-42 Lus10003282 [exp] 203 / 2e-55 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10000489 [exp] 189 / 6e-52 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10014701 [exp] 188 / 2e-50 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G023500 [exp] 570 / 0 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G022900 [exp] 565 / 0 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 553 / 0 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 480 / 5e-161 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 426 / 1e-142 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1) Potri.005G057900 [exp] 419 / 4e-137 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.007G110000 [exp] 405 / 8e-132 AT3G18670 404 / 2e-133 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 352 / 9e-110 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 241 / 2e-69 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 229 / 3e-65 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10014030 pacid=23156753 polypeptide=Lus10014030 locus=Lus10014030.g ID=Lus10014030.BGIv1.0 annot-version=v1.0 ATGGCAACGCACAGCAACGTTATTCCGACTTGCAGGGATGTTCTTGAATCCGTAGGAGACAGAAGCTACGACAGCTGGAGCACGTGCCTCAGATCCTACC TCCTGTCTCAGGACCTATGGGACTTGATTCAGTTGCGTGCAGAGCTACCGCCACCACTTCCGCCTGGTTGGCAGAGGAGGAATGCGGCCGCTCTCCACGC TATTCACATTTCTTTGGGTCCCGACATGCTTTACCATATTCGCGAAATCGATTCGGCTAAGGAGGCTTGGGACGCCCTGTCCGATTTGCACAACCATAAG CTCCACGAGTTACAAGCTTGTGGAACGGATGATCAACAGATCGATACAGGAACGACAACTAACAGAAACAGAGCATCTCAGTATTCCTACCTAATCACTA TGGTAAGGGAAGGGCGAGACACAAAAGGCATCAGCAACTTCATCGGCTCGAATCCCGAATCGGTAAGATCCCGGTTAGAGCCGGGACAAGGAACGGTGCT TCATCTGGCGGCTGAGTTGGGGAATGCAGAGGTAGTGGAGGAGCTGATGTCATGGATGGACGAGGAAGACCTAGAAATCCAGGACAACGATGGAAGCACT GCGCTACACATTGCAGCGTCGAGAGGCCACCTCCGGGTGGCCGAGCTCATGGTTCGTGAGGACTCGAGCTTGGTGACGATTATGAACAAGAGGGACATGA TACCGTTGCGAGAGGCTTGTGAGAAACACCACAAGGAACTCGCCTCTTTCCTTTACCGCACCACTCCTACTACTTTCCTTTGTGACGAGAACGACGGGAA GTACGTGGCAAATATCCTCAATTGCTCCATCCTCGGCCTAATGTTTGATATTCCGTTGGATTTGTTGAGGCGTAGGAAAGGTATAGCTATGGTGATGGAT GCTAGCAAAGTCAACGTCGCGATTCAATTGTCCACTATGCCTGACGCATTCCCTAGCGGAAGCCCGGTCGTCTTTTGGATGGGATGGATATATTCATTTG TACAAGTAAAGCTACCGGATGCTTTGTATGCATCAAGAGATGAGGGCTCCGCGACCGACTCATCGAAGGAAGACGACGGATTTGGACTGATGACTTCACC GGACGGGGATGATATCATCAAAGATGTCGATAAATACTGGAAATCCAAACATGGCATGATAGTAGAACATAACTGGTCCAGTAAACTGCATTCCTTCATT ATAAAAGTTACAGGGACCAAGCAAATACATGCACTGAAAACAGTCCACTTATGCTCCCTAGAACTCTTAAACCTGACGTTCCAACAGATCTCAAGGTCAG ATTTCAGGAAGTTTGGAGAGATGGGAGTGTACGAAGCATTCGACAATGCGGTAAAGAACGGGATAGTGGAATTCGTGAAGAGGGGAATCGAGGTTTGCCC TGCTCTGTTGCGTAGACTGGACAAGAAGGGTAGAAATGTGTTGATGCTGGCGGTCGAGTTTCGACAAGAGAAGGTGTTCGACATGTTGTTATCCACTCTG CCGGATGTGGCAACCACAGTGTCGTTGGCCGATAAGGACGGGAACACAGTGCTGCATTTGGCTGGGATGATGTCTTGTGATGATGCTAAGCTTTCAAGCA TCTCTGGCGCTGCTCTTCAAATGCAAAGAGAACTCCATTGGTTCCTGGAAGTGGAGAGGGTGACAAACCCAATGTACAAACGCAAGAAAAACAACAAGAA CGAAACAGCCAGACAAACATTCACAAGAACCCACAAGGGCCTGGCTTCATCGGGAGAAAAATGGATGAAGGAGACCGCCACGTCAGCCACGGTGGTCGGA GCTCTCATCATCACGATCATGTTCACAGCTGTGTTCACCGTTCCGGGCGGGAACAACCAAGAGACCGGCATCCCCATTCTACTCAACCAATGGGCATTCA AAATCTTCGTGGTGTCCGACTCGATTTCCCAGTTCGCTGCCTCGACGTCGGTGCTGATGTTCCTCGCCGTCCTGACGTCGCGCTATTCGGAGGCTGATTT CCTGAGGTCTCTGCCCACCAAGATGTTGATCGGGCTGTCGATGCTCTTCATCTCGATCTCAACCATGATGGTGGCGTTCTGTGCCGCGACTGTGATGGTC ATGGATCGGCGGTGGGAATTCGTGGTTCCGATTATGCTGGTGGCGGCTGTTCCGGTCAGTTTGTTTATGTTGCTGCAGTTTCCTTTGCTCGTTGAGATTT TCTTCTCGACATATGGCATTGGGATCTTCAAGAGGAATCCAAAGCCGTGGCTTTAA
AA sequence Show only first row Show all	>Lus10014030 pacid=23156753 polypeptide=Lus10014030 locus=Lus10014030.g ID=Lus10014030.BGIv1.0 annot-version=v1.0 MATHSNVIPTCRDVLESVGDRSYDSWSTCLRSYLLSQDLWDLIQLRAELPPPLPPGWQRRNAAALHAIHISLGPDMLYHIREIDSAKEAWDALSDLHNHK LHELQACGTDDQQIDTGTTTNRNRASQYSYLITMVREGRDTKGISNFIGSNPESVRSRLEPGQGTVLHLAAELGNAEVVEELMSWMDEEDLEIQDNDGST ALHIAASRGHLRVAELMVREDSSLVTIMNKRDMIPLREACEKHHKELASFLYRTTPTTFLCDENDGKYVANILNCSILGLMFDIPLDLLRRRKGIAMVMD ASKVNVAIQLSTMPDAFPSGSPVVFWMGWIYSFVQVKLPDALYASRDEGSATDSSKEDDGFGLMTSPDGDDIIKDVDKYWKSKHGMIVEHNWSSKLHSFI IKVTGTKQIHALKTVHLCSLELLNLTFQQISRSDFRKFGEMGVYEAFDNAVKNGIVEFVKRGIEVCPALLRRLDKKGRNVLMLAVEFRQEKVFDMLLSTL PDVATTVSLADKDGNTVLHLAGMMSCDDAKLSSISGAALQMQRELHWFLEVERVTNPMYKRKKNNKNETARQTFTRTHKGLASSGEKWMKETATSATVVG ALIITIMFTAVFTVPGGNNQETGIPILLNQWAFKIFVVSDSISQFAASTSVLMFLAVLTSRYSEADFLRSLPTKMLIGLSMLFISISTMMVAFCAATVMV MDRRWEFVVPIMLVAAVPVSLFMLLQFPLLVEIFFSTYGIGIFKRNPKPWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10014030 [exp]	0	1
					Lus10030648 [exp]	2.8	0.8394
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	12.0	0.8086
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	20.1	0.7592
AT3G18570			Oleosin family protein (.1)		Lus10017992 [exp]	22.1	0.8370
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10016569 [exp]	36.4	0.8110
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	43.1	0.8262
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037662 [exp]	51.4	0.8134
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	55.5	0.7991
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10031766 [exp]	56.5	0.7934
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10000771 [exp]	69.0	0.7510

Compare expression of checked genes

Lus10014030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.