Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48690 246 / 4e-79 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 238 / 6e-76 ATCXE13 carboxyesterase 13 (.1) AT1G47480 235 / 4e-75 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 232 / 6e-74 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 224 / 7e-71 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 200 / 2e-61 ATCXE5 carboxyesterase 5 (.1) AT1G49650 196 / 6e-59 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 187 / 2e-56 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 142 / 6e-39 ATCXE17 carboxyesterase 17 (.1) AT5G06570 129 / 4e-34 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019884 [exp] 406 / 7e-143 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 301 / 1e-100 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10027909 [exp] 269 / 6e-88 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10019885 [exp] 264 / 4e-87 AT2G03550 173 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 266 / 6e-87 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 256 / 5e-83 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 248 / 6e-80 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10042662 [exp] 243 / 5e-78 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 238 / 8e-76 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104300 [exp] 306 / 1e-102 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104100 [exp] 304 / 6e-102 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 302 / 5e-101 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 299 / 2e-99 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 296 / 1e-98 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 291 / 2e-96 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.014G032800 [exp] 266 / 3e-87 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 255 / 9e-83 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105000 [exp] 250 / 8e-81 AT2G03550 234 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G143200 [exp] 246 / 7e-79 AT1G47480 235 / 1e-75 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10014033 pacid=23156833 polypeptide=Lus10014033 locus=Lus10014033.g ID=Lus10014033.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCGACGAGATCGAACGAGATTTCCCTGGTTTCTTCAAGGTCTACAAGGACGGCCGCGTCGAGCGTTATTGGGACACCGGCGACCACGTCC CCGCCGCCCTCGACCCCGAAACAGGCGTCGAGACCAAGGACGTCGTCGTCTCCCCGGAAACTGGGGTCAAAGCCCGTATCTTCCTCCCCAAAATTGTCGA CGGCGCCGGGAAACTCCCCGTAATCCTCCACTTCCACGGCGGCGGGTTCTGCATCGGGTCGCCGTTTTCCGCTCCGTTTAAGGTGTTTCTCTCGGCCTTG GCCGCCCAGACGAACTCGATCACGATCTCGATCGACTACCGTCTGGCGCCGGAGCACAAGCTCCCGATAGCGTTCGACGACTGCTGGAAGCTGCCGCTTA TCGTCTACTTCCACGGCGGTGGATTCTGCGTCGAGACTCCTTTTAATCAGAAGTACCACCGCTGCGTCAATTTGCTAGCCTCCCAGGTGAAGGCGATCGC CGTCTCGGTGGACTACAGGCTAGCTCCGGAGAATCCGTTGCCCATCGGATACGACGACTCCTGGTCTTGTCTCCAATGGATTGCGTCTCACTTGAAAGGA GCCGGTCCTGAACCGTGGCTGGACTCGCCCGCGGGTTTTAGGAACTCGCACGCGGATTTCAGCCGAGTGTTTTTGGCCGGAGACAGTGCCGGAGGGAACA TAGCGCACCAGATGGCCATTCGGAACATTGCAGGCAAGGTGTTCGACGAAATGTCTCTAGGAATTGTGCTGATCCATCCATACTTCTGGGGAAAAGATCC GATTGGTGCAGAGCCAGGGGAGGCTGAGAAGAGGAGGACGGTTGATGGAATCTGGTACTTCGCTTGTCCGACGACGAGCGGGTGCGATGACCCGTTTATA AACCCGATTGTCGACCCGAATTTGGAGAAGCTCGGGTGCAGGAAGGTGTTGGTGATTGTGGCGGAGAGGGATGTGCTGAAGGAGAGAGGGAGGAGTTACT ATGAGACGTTGGAGAAGAAGACTGGTTGGGGTGGGCAAATCGAGTATTTCGAGGTTAAGGAAGAGGATCATGTGTTCCATTTGCAGAAGAGTGAGTGTGA GAATGCTGCTCTCATGAACAGAAAGATCGTCGAGTTCATCAATGGTGGAAGATAA
AA sequence Show only first row Show all	>Lus10014033 pacid=23156833 polypeptide=Lus10014033 locus=Lus10014033.g ID=Lus10014033.BGIv1.0 annot-version=v1.0 MASSDEIERDFPGFFKVYKDGRVERYWDTGDHVPAALDPETGVETKDVVVSPETGVKARIFLPKIVDGAGKLPVILHFHGGGFCIGSPFSAPFKVFLSAL AAQTNSITISIDYRLAPEHKLPIAFDDCWKLPLIVYFHGGGFCVETPFNQKYHRCVNLLASQVKAIAVSVDYRLAPENPLPIGYDDSWSCLQWIASHLKG AGPEPWLDSPAGFRNSHADFSRVFLAGDSAGGNIAHQMAIRNIAGKVFDEMSLGIVLIHPYFWGKDPIGAEPGEAEKRRTVDGIWYFACPTTSGCDDPFI NPIVDPNLEKLGCRKVLVIVAERDVLKERGRSYYETLEKKTGWGGQIEYFEVKEEDHVFHLQKSECENAALMNRKIVEFINGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	0	1
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	2.2	0.9425
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	7.5	0.8889
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	8.9	0.9115
					Lus10020006 [exp]	10.6	0.9045
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	13.4	0.9156
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	14.1	0.9266
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	17.0	0.9023
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	19.0	0.9147
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	20.5	0.9056
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	21.5	0.8919

Compare expression of checked genes

Lus10014033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.