Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39300 46 / 1e-05 unknown protein AT3G55060 40 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019883 [exp] 328 / 8e-115 AT2G39300 56 / 8e-09 unknown protein Lus10001974 [exp] 71 / 1e-13 AT3G55060 655 / 0.0 unknown protein Lus10030304 [exp] 63 / 5e-11 AT3G55060 595 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214300 [exp] 62 / 8e-11 AT3G55060 674 / 0.0 unknown protein Potri.008G047200 [exp] 57 / 5e-09 AT3G55060 637 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014034 pacid=23156805 polypeptide=Lus10014034 locus=Lus10014034.g ID=Lus10014034.BGIv1.0 annot-version=v1.0 ATGGGATCCGATTCGAAAGAGGAAGTAATTCCAATCTCGGTCGAAGATGATCACTACGGTGCTGGATCATTAACCAGCAGAAGTTCCGGCTCAAATTCAG TTACTTTCGAGGAGGGTTTGGCTAATTCGGGGGCAGAGGAGAAGCACAGACTGCTCAGCGAGAGGGTTAGATATCTGGCAGAGCAGAATGTCTTGCTCCA GAAGGAAGTTTCTGAAGCCAAAAGTTCACTGGCTTGTTCAGAGCAACAAGTTAGACATCTAAGACAAAACCTGTCAGAATTGCAGGAGAAGTATAGATCA GCTGAAGAGGAATTGAATTGTTTCCGGATGGATTTCGAGAATGCTGTAATGACATCAAAGGATAATGCATTACTGAAAATAGAGCTACAAGCTGAGGAGC TGCTGACGAGTCTGATGAAGAAGAATCTGCACGCCAGAGAATTGAAAGTTCAGCAGTTGCAGGCTGAGATAGCTGGTTTGAATAACCACTCCCGCAAGTC TGAAGATTTCTTGGTGAAGAAGGATGAGATGATGACAGAGCTTTGGTCGACGAAGGAGATACTGGTGAAAGTAGCAGAGGAGAGGGACATGGTGTGGGAG GAAGTGAATAAGTACAAGGAGATGAACATGCTGTTGAAGAAGAAGGTAGAGGAACTTGAAGAAGAAGTAATGGTGAAAGAAGGTGAAATCACAATTCTAA GGGACAACTTTAGGGAGAAGAGACCTTCCTTGAGTCTTCTTTCTGGATAA
AA sequence Show only first row Show all	>Lus10014034 pacid=23156805 polypeptide=Lus10014034 locus=Lus10014034.g ID=Lus10014034.BGIv1.0 annot-version=v1.0 MGSDSKEEVIPISVEDDHYGAGSLTSRSSGSNSVTFEEGLANSGAEEKHRLLSERVRYLAEQNVLLQKEVSEAKSSLACSEQQVRHLRQNLSELQEKYRS AEEELNCFRMDFENAVMTSKDNALLKIELQAEELLTSLMKKNLHARELKVQQLQAEIAGLNNHSRKSEDFLVKKDEMMTELWSTKEILVKVAEERDMVWE EVNKYKEMNMLLKKKVEELEEEVMVKEGEITILRDNFREKRPSLSLLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39300			unknown protein		Lus10014034 [exp]	0	1
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	6.7	0.8068
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	10.4	0.7988
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	14.1	0.7980
					Lus10037540 [exp]	15.7	0.7918
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	16.1	0.7926
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	18.7	0.7827
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	22.4	0.7890
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	24.9	0.7720
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	25.0	0.7722
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	27.9	0.7472

Compare expression of checked genes

Lus10014034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.