Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34480 338 / 2e-117 Ribosomal protein L18ae/LX family protein (.1) AT3G14600 334 / 5e-116 Ribosomal protein L18ae/LX family protein (.1) AT1G29965 329 / 6e-114 Ribosomal protein L18ae/LX family protein (.1) AT1G29970 325 / 3e-110 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT3G48690 212 / 4e-66 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 209 / 7e-65 ATCXE13 carboxyesterase 13 (.1) AT2G03550 201 / 4e-62 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 197 / 2e-60 ATCXE5 carboxyesterase 5 (.1) AT1G49650 194 / 1e-58 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 183 / 7e-55 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023457 [exp] 373 / 5e-131 AT2G34480 337 / 2e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10019881 [exp] 370 / 3e-130 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10023454 [exp] 370 / 3e-130 AT2G34480 337 / 4e-120 Ribosomal protein L18ae/LX family protein (.1) Lus10019882 [exp] 353 / 2e-121 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10040332 [exp] 313 / 5e-108 AT2G34480 290 / 4e-102 Ribosomal protein L18ae/LX family protein (.1) Lus10027909 [exp] 226 / 3e-71 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 222 / 8e-70 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10014036 [exp] 221 / 2e-69 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021743 [exp] 183 / 1e-54 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057600 [exp] 358 / 2e-125 AT2G34480 342 / 3e-122 Ribosomal protein L18ae/LX family protein (.1) Potri.011G072400 [exp] 351 / 2e-122 AT2G34480 349 / 4e-125 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063400 [exp] 351 / 2e-122 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.004G063300 [exp] 351 / 2e-122 AT2G34480 345 / 1e-123 Ribosomal protein L18ae/LX family protein (.1) Potri.004G142400 [exp] 243 / 7e-78 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 242 / 1e-77 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 240 / 5e-77 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 238 / 5e-76 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104900 [exp] 238 / 2e-75 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 233 / 3e-74 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01775 [flax] [poplar] Ribosomal_L18A Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10014035 pacid=23156813 polypeptide=Lus10014035 locus=Lus10014035.g ID=Lus10014035.BGIv1.0 annot-version=v1.0 ATGGGCACCGAGACAGTCCCGGCTTCACTGTCCGACCCGGAAACCACCGTCCAATCCAAAGACGTACCTTACTCCCTTGACCCGAACCTCCAAGCCAGGC TCTACCTCCCTAAGGAAACCAAACCGGGTCAGAAGCTTCCGCTCCTGGTGTACTACCATGGCGGAGGATTCGTGATCGAAACCGCCTTTTCTCCGACGTA CCATAACCACTTGAATATCTTGGTCGCCGAGGCCAACGTCGTCGCTGTCTCCGTTGACTACCGGCGCGCGCCGGAGAGTCCCCTTCCGATACCGTATGAG GACTGCTGGGCTGCGCTTAAATGGGCCGGCTCGCATGCTGGTGGATCGGGCCCGGAGCAGTGGCTGAACGATCATGTGGATTTCGGGTCCGTGTTTCTCG CGGGTGATTCGGCCGGGGCGAATATTGTCCACCACGTGGCTATGTGGTTTGGGCAGGAGGAGATCGAAGGAATTTCACGTATGAAAGGATTGGTTTTGGT GCACCCTTATTTTGCTAGGAAGGAACCAATTGGTAAGGAGGAGCGGCTGCCGAAGGCGATTCTCATTTCTCTTGTGTGTTCGGCAAAGATGGTTGCATAC AGGTATCACCAATACCAGGTTGTGGGGAGAGCTCTGCCGACTGAGAGTGATGAACACCCGAAGATCTACAGGATGAAGCTGTGGCACACCAATGAGGTCC GTGCCAAGTCCAAGTTCTGGTACTTCTTGAGGAAGCTGAAGAAGGTCAAGAAAAGTAATGGGCAGATGCTTGCTATCAACGAGATTTTTGAGAAGAACCC AACTAAGATCAAGAACTATGGCATCTGGCTGAGGTACCAGAGCAGGACTGGTTACCACAACATGTACAAGGAGTTCCGTGATACTACCCTGAATGGTGCA GTTGAACAGATGTACGATGAGATGGCTTCTAGGCACAGGGTGAGGTCCCCTTGCATCCAGATTATCAAGACTGCCACCATCCCTGCGAAGCTGTGCAAGA GGGAGAGCACCAAGCAGTTCCATAACAGCAAGATCAAGTTCCCGCTGGTGTTCAAGAAGGTTAGACCGCCAACCAGGAAGCTCAAGACCACATACAAGGC ATCAAGACCCAACCTGTTTGTCTAA
AA sequence Show only first row Show all	>Lus10014035 pacid=23156813 polypeptide=Lus10014035 locus=Lus10014035.g ID=Lus10014035.BGIv1.0 annot-version=v1.0 MGTETVPASLSDPETTVQSKDVPYSLDPNLQARLYLPKETKPGQKLPLLVYYHGGGFVIETAFSPTYHNHLNILVAEANVVAVSVDYRRAPESPLPIPYE DCWAALKWAGSHAGGSGPEQWLNDHVDFGSVFLAGDSAGANIVHHVAMWFGQEEIEGISRMKGLVLVHPYFARKEPIGKEERLPKAILISLVCSAKMVAY RYHQYQVVGRALPTESDEHPKIYRMKLWHTNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGA VEQMYDEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	0	1
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	1.0	0.9695
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	2.0	0.9530
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	3.2	0.9652
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	3.5	0.9454
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	3.9	0.9623
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	4.2	0.9514
AT5G40080			Mitochondrial ribosomal protei...		Lus10011032 [exp]	6.4	0.9218
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	7.0	0.9507
AT1G07830			ribosomal protein L29 family p...		Lus10032334 [exp]	7.2	0.9442
AT5G02610			Ribosomal L29 family protein ...		Lus10023449 [exp]	7.4	0.9468

Compare expression of checked genes

Lus10014035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.