Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03550 322 / 8e-110 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 320 / 7e-109 ATCXE13 carboxyesterase 13 (.1) AT3G48690 314 / 1e-106 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 307 / 4e-104 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 292 / 3e-98 alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 281 / 4e-93 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 274 / 6e-91 ATCXE5 carboxyesterase 5 (.1) AT1G49640 269 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 154 / 4e-44 ATCXE17 carboxyesterase 17 (.1) AT5G06570 137 / 8e-38 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019882 [exp] 343 / 3e-118 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10027909 [exp] 318 / 3e-108 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 315 / 8e-107 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10014033 [exp] 301 / 1e-100 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 293 / 4e-98 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10021745 [exp] 292 / 4e-98 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 286 / 1e-95 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 237 / 3e-77 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 227 / 2e-71 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104300 [exp] 368 / 4e-128 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104100 [exp] 365 / 6e-127 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 361 / 2e-125 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 359 / 6e-124 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 357 / 2e-123 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 337 / 1e-115 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.014G032800 [exp] 321 / 2e-109 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032600 [exp] 277 / 3e-92 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 275 / 1e-91 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G105100 [exp] 273 / 1e-90 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10014036 pacid=23156859 polypeptide=Lus10014036 locus=Lus10014036.g ID=Lus10014036.BGIv1.0 annot-version=v1.0 ATGTCCGATCAAATCGCCCTCGACCTCTCCCCTCTAATCCGCATCCACAAAGACGGCACCGTCGAACGTCTACTCGGAACCACAACCCTCCCCGCCGGCT ACGACTCTCAAACCGACGTCGTCTCCAAGGACATTGTCTACTCCGCCGATCCAACTCTCTCCGCCCGCATTTACGCCCCTTCCGCCGCCGTCACGGACGC CGCGCAAAAGAACAGTCTCCCGCTCCTCGTCTACTACCACGGCGGCGGCTTCTGCATCGAGTCCGCTTTCTCCCCGCTATACCACAGCTACCTCAACTCC CTCGTCGCCGCTGCCCAAATCGTCGCCGTCTCCGTCGAGTACCGCCTCGTCCCGGAGCACCCGCTACCGTGCGCCTACGATGATTCCTGGGCGGCGCTCA AATGGGCCGCCTCCCACGCTGGAGGAGACGGCGCCGAAGAGTGGCTGAACGATCTCGTCGATTTCGGGAAGGTGTACTTGGCCGGAGACAGCGCCGGCGC CAATATCGCTCACCACGTCGCGATGAAGAACGGGGAGGAGAAGCTGATCGACAATCTGGGCGTTGTGCTTGTGGATCCGTACTTTTGGGGGGAGGATCCG ATCGGGAGTGAGCCGAAGGATGAAGAGAGTCGGAGAGTGCCGGGCGGGCTGTGGCTGCTGGCGTATCCGGGTTCGACGGCCGGGTTGGACGACCCGGAGA TTAACGCGACGGTTGACCCGAATCTGCCGGGTTTGGGTTGCAAGCGGGTGCTGGTTATGGTGGCGGAGAAGGATATGTTGAAGGATAGAGGGTGGAGTTA TTACGAGACGATGAGGAAGAATGGATGGAAAGGGACGGTGGAGATTGAAGAGACGAAGGAGGAAGGGCATGTTTTCCATCTGTTTAATCCGGCGTCGGAG AACGCGGCGGAGAGGCTGAAACGCACCGCTTTGTTCTTGAATCAGGGGAGGATATGA
AA sequence Show only first row Show all	>Lus10014036 pacid=23156859 polypeptide=Lus10014036 locus=Lus10014036.g ID=Lus10014036.BGIv1.0 annot-version=v1.0 MSDQIALDLSPLIRIHKDGTVERLLGTTTLPAGYDSQTDVVSKDIVYSADPTLSARIYAPSAAVTDAAQKNSLPLLVYYHGGGFCIESAFSPLYHSYLNS LVAAAQIVAVSVEYRLVPEHPLPCAYDDSWAALKWAASHAGGDGAEEWLNDLVDFGKVYLAGDSAGANIAHHVAMKNGEEKLIDNLGVVLVDPYFWGEDP IGSEPKDEESRRVPGGLWLLAYPGSTAGLDDPEINATVDPNLPGLGCKRVLVMVAEKDMLKDRGWSYYETMRKNGWKGTVEIEETKEEGHVFHLFNPASE NAAERLKRTALFLNQGRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10014036 [exp]	0	1
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	4.1	0.9419
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	10.2	0.9277
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10036550 [exp]	15.6	0.9077
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	16.1	0.9175
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	17.0	0.9197
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	17.7	0.9276
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	19.5	0.8987
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	19.9	0.9141
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	21.8	0.9152
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	22.4	0.9249

Compare expression of checked genes

Lus10014036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.