Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15530 770 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 451 / 4e-150 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 436 / 2e-144 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 424 / 6e-140 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 413 / 2e-135 RLK receptor lectin kinase (.1) AT4G02420 403 / 8e-132 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 403 / 2e-131 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 402 / 3e-131 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 402 / 5e-131 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 393 / 6e-128 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019879 [exp] 845 / 0 AT1G15530 621 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 442 / 8e-147 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 439 / 2e-145 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 434 / 2e-143 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 432 / 1e-142 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 431 / 4e-142 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 429 / 2e-141 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 427 / 2e-141 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10040774 [exp] 429 / 3e-141 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083300 [exp] 879 / 0 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.012G084900 [exp] 854 / 0 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 447 / 9e-149 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 443 / 4e-147 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 441 / 2e-146 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 441 / 2e-146 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 439 / 1e-145 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.003G196600 [exp] 437 / 9e-145 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 433 / 5e-143 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G103200 [exp] 426 / 2e-140 AT3G08870 644 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10014037 pacid=23156844 polypeptide=Lus10014037 locus=Lus10014037.g ID=Lus10014037.BGIv1.0 annot-version=v1.0 ATGCCTCGTCGGCGGCGCCACCACCCGCCACTCATCGTCCTCCTCCTGCTCCTTCAACTTTTGGCATATCCACCACCATGTCTGGGAGTGGATTTCCTCT TCAATTCCTTCAACGCAAGCAGGCCGGGAGTTAGCCTAATTCCCGACGCACGAGTTGACTCTTCCGTCATCCGCCTCACCAATGACACCAACCAGTACTC CCTCGGCCGCGTCTTTTACCCGATCCGGATCCCCATCGTCAGGTCATCAAACTCCTCCTCCAACTCCTCCACTGTTCTATCTTCCTTCTCCACTTCCTTC GTCTTCTCCGTTTTGCCCGAAATCGCCACCAGCCCTGGCTTCGGCCTCGCCTTTGTCCTCTCCAACTGGTCCAACCCTCCCAACGCCCTCGCCAGCCAGT ATTTCGGCCTCTTCACTAACGCCACCGTCTCCTTTCAAGCTCCTCTTCTCGCCGTCGAGTTTGACACCGGGCAGAACCCGGAGTTTAATGACCCGGACGG CAACCACATCGGAATTGATCTCAACAACATTGAATCAGTCAAGACGGAGACCGCTGGCTACTACAATTCTTCTGGCGGCTTCGTTCCCGTGGAGATGAGA ACCGGTCAGAACATTCATGCTTGGATCGAATTCGACGGTCCCAGTTTCGAGATCAACGTGACGGTTGCGCCGGTTGGGATTCCTCGTCCTTCCTTGCCCA CTCTTACTTACAGAGATCCGTCGATCGCCAATTACGTCTCCGCTGAAATGTTCGTCGGATTCTCAGCTTCTAAAACCACTTGGGTTGAGGCACAGAGGAT TTTATCCTGGAGTTTCAGCGATACAGGGGAAGCCCGAGATCTCAACACCACGAATCTCCCCGTTTTCCGATTTCCTTCGACGGCTTCAAATTCGATCTCT CAAGGAGCGATTGCAGGTATCACAATTGGATTCGCAGCTTTTGTGGCGGTTTGTGCTCTAGGGTTTTACTGGTTTTGGAGGACGAACAAGAACAAACAAG GAGAAGAAGAGGAAGAAGAAGTTGAAGATTGGGAACACGAATACTGGCCTCACAGGTTCTCCTACGACGAACTCACGCAAGCCACCAATCAATTCTCCAA AGATTTGCTGCTAGGTTCAGGAGGATTCGGCAAAGTTTACAAAGGCACGCTGGCGAACGGAACAGAGATAGCGGTGAAATGCGTCAACCACGACTCAAAG CAAGGTCTAAGGGAATTCATGGCGGAGATCTCGAGTATGGGGCGTCTTCAACACAAGAACCTAGTCCAAATGCGAGGATGGTGCCGGAAATCCAACGAAC TTATGCTCGTGTACGACTACATGCCCAACGGGAGTCTAGATCGCTACATCTTCGCCAAATCGATCAAGCTCCTCAACTGGAAACAGCGCCAGCAGATCCT AGCCGACGTAGCCGAGGGCTTGAACTACCTCCACCACGGATGGGACCAAGTGGTGATTCACCGCGATATCAAATCCAGCAACATTCTCTTGGATTCGGAA ATGCGGGGGCGCGTGGGTGATTTCGGATTGGCCAAACTGTACAGCCACAACGAAATCCCCAACACGACTAGGGTGGTGGGGACGTTGGGTTACCTGGCGC CGGAGCTGGCGAGCATCGCGGTGCCGACGGAGGCGAGCGACGTGTACAGCTTCGGGGTGGTGGTGTTGGAAGTGGCGTGTGGGAGGAGGCCGATCGAGCT GGGAACGGCGGCGGAGGATGACACGGTGTTGCTGGACTGGGTGAGGGATTTGTACGCGGAAGGGAGGGTTGTGGAGGCGGCGGACGAGAAGGTGAAAGGG GAATTTAGGTTGGAAGAGATGGAGACTGTGTTGAAGCTTGGATTGGCTTGTTGCCATCCTGATCCTGTAAGGCGGCCCAACATGAAGGTGGTGGCTGCCG TTTTGGTAGGAGAAGATGGCGGAACGACGGAATTGCAGACTGATTTCGCCGCCGGCGGTGGTGGTGGTGATAACAATGTGGATACTGAGAACGAGAACGA GTTAGTGCTGCGTGAACATGTTGTTTGA
AA sequence Show only first row Show all	>Lus10014037 pacid=23156844 polypeptide=Lus10014037 locus=Lus10014037.g ID=Lus10014037.BGIv1.0 annot-version=v1.0 MPRRRRHHPPLIVLLLLLQLLAYPPPCLGVDFLFNSFNASRPGVSLIPDARVDSSVIRLTNDTNQYSLGRVFYPIRIPIVRSSNSSSNSSTVLSSFSTSF VFSVLPEIATSPGFGLAFVLSNWSNPPNALASQYFGLFTNATVSFQAPLLAVEFDTGQNPEFNDPDGNHIGIDLNNIESVKTETAGYYNSSGGFVPVEMR TGQNIHAWIEFDGPSFEINVTVAPVGIPRPSLPTLTYRDPSIANYVSAEMFVGFSASKTTWVEAQRILSWSFSDTGEARDLNTTNLPVFRFPSTASNSIS QGAIAGITIGFAAFVAVCALGFYWFWRTNKNKQGEEEEEEVEDWEHEYWPHRFSYDELTQATNQFSKDLLLGSGGFGKVYKGTLANGTEIAVKCVNHDSK QGLREFMAEISSMGRLQHKNLVQMRGWCRKSNELMLVYDYMPNGSLDRYIFAKSIKLLNWKQRQQILADVAEGLNYLHHGWDQVVIHRDIKSSNILLDSE MRGRVGDFGLAKLYSHNEIPNTTRVVGTLGYLAPELASIAVPTEASDVYSFGVVVLEVACGRRPIELGTAAEDDTVLLDWVRDLYAEGRVVEAADEKVKG EFRLEEMETVLKLGLACCHPDPVRRPNMKVVAAVLVGEDGGTTELQTDFAAGGGGGDNNVDTENENELVLREHVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15530			Concanavalin A-like lectin pro...		Lus10014037 [exp]	0	1
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	5.8	0.8394
					Lus10039654 [exp]	11.5	0.7700
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	12.8	0.7990
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001672 [exp]	22.4	0.7692
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	23.7	0.8106
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	24.7	0.8010
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10004646 [exp]	114.0	0.7291
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030841 [exp]	119.7	0.7437
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	140.0	0.7289
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	146.0	0.7110

Compare expression of checked genes

Lus10014037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.