Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19170 56 / 9e-09 ATPREP1, ATZNMP presequence protease 1 (.1.2) AT1G49630 55 / 2e-08 ATPREP2 presequence protease 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019878 [exp] 46 / 3e-06 AT4G33925 186 / 3e-62 suppressor of sni1 2, unknown protein Lus10014039 [exp] 0 / 1 AT3G19170 1560 / 0.0 presequence protease 1 (.1.2) Lus10019877 [exp] 0 / 1 AT3G19170 1557 / 0.0 presequence protease 1 (.1.2) Lus10012075 [exp] 0 / 1 AT3G19170 1484 / 0.0 presequence protease 1 (.1.2) Lus10027907 [exp] 0 / 1 AT3G19170 1471 / 0.0 presequence protease 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G142300 [exp] 55 / 1e-08 AT3G19170 1723 / 0.0 presequence protease 1 (.1.2) Potri.009G103700 [exp] 52 / 1e-07 AT3G19170 1677 / 0.0 presequence protease 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014038 pacid=23156822 polypeptide=Lus10014038 locus=Lus10014038.g ID=Lus10014038.BGIv1.0 annot-version=v1.0 ATGAGAACAAGGATTGCAATGCAAAAAGGATTCAACCATACTGGGTGCACTGTGTGGGTCAAGAAAGCAGCACCCTTTGAAATAGCCGTTTGTGGGGTTG ACAAATGGAAGTTTGAATACATATTTATGAATGCAATGACCTTTCCCGATCGGACTCCGGCTACCCAATTGCTTACAGGATACAGATTCCCAGAATGTGT GGATGCTGAAAGCATTTTTCAACAAGACGGCTGGACCTTTGATCTCCACGATCCTTCCAAAGAGATAACGTCTAAAGGTAGCCATTATAATTTCCATGCA TGTCCTACTACCGGTTCCAAATCTAAGCTTCTTCTTCCTGGACTGAGTAAAGTTGCAGAAGAGTGGAGGCCTGGTAAAGAGGAAGCTACAAACATCAAAG CTTTGCTTGAAGAGTGGACATGGTTGTTACGGGCGGCCATCCACTGTTTAGCAAAGGCAACAAGCTCTTACATATCGCAAGTTGATGCTTACACTGCACG CGAAACAACAACAACAGCAAATTGGCTAATACCCTTCAGATCGGGAGAAGAAATAGTAGGATCAACAAATTTAAGAGCAGGAGTGAGAGTGAGATCTTGT TACAAGAAGTTGTTCTCCTTTGTTGACATTGTCGTAGAAAAAGCCACAATAGCTTTCAGGGATGCACGAGTACTCCTCCTGCCTCTTTGA
AA sequence Show only first row Show all	>Lus10014038 pacid=23156822 polypeptide=Lus10014038 locus=Lus10014038.g ID=Lus10014038.BGIv1.0 annot-version=v1.0 MRTRIAMQKGFNHTGCTVWVKKAAPFEIAVCGVDKWKFEYIFMNAMTFPDRTPATQLLTGYRFPECVDAESIFQQDGWTFDLHDPSKEITSKGSHYNFHA CPTTGSKSKLLLPGLSKVAEEWRPGKEEATNIKALLEEWTWLLRAAIHCLAKATSSYISQVDAYTARETTTTANWLIPFRSGEEIVGSTNLRAGVRVRSC YKKLFSFVDIVVEKATIAFRDARVLLLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014038 [exp]	0	1
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10027907 [exp]	3.5	0.9045
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	14.7	0.8977
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	17.3	0.9054
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038166 [exp]	32.2	0.9026
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	33.3	0.8914
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10037975 [exp]	34.8	0.8694
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043313 [exp]	37.6	0.9059
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	40.8	0.9073
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	42.7	0.9053
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	45.1	0.9070

Compare expression of checked genes

Lus10014038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.