Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19170 1440 / 0 ATPREP1, ATZNMP presequence protease 1 (.1.2) AT1G49630 1431 / 0 ATPREP2 presequence protease 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019877 [exp] 1857 / 0 AT3G19170 1557 / 0.0 presequence protease 1 (.1.2) Lus10012075 [exp] 1494 / 0 AT3G19170 1484 / 0.0 presequence protease 1 (.1.2) Lus10027907 [exp] 1473 / 0 AT3G19170 1471 / 0.0 presequence protease 1 (.1.2) Lus10014038 [exp] 0 / 1 AT3G19170 56 / 5e-13 presequence protease 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103700 [exp] 1520 / 0 AT3G19170 1677 / 0.0 presequence protease 1 (.1.2) Potri.004G142300 [exp] 1516 / 0 AT3G19170 1723 / 0.0 presequence protease 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF08367 [flax] [poplar] M16C_assoc Peptidase M16C associated CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10014039 pacid=23156860 polypeptide=Lus10014039 locus=Lus10014039.g ID=Lus10014039.BGIv1.0 annot-version=v1.0 ATGGAGAGAACTGCTCTTCTCCGTTGTTCGTCTCTAGCTACCAACCGATTGTTCTGCTTCCCGCGGAGGCTCTCGTTTTCTCTTCGTCGTCTTTCCGCCT CCTCTTCTCGTCCTGCTTCCTCCTTATCCTCCGCTTCTCTCCGCCGCTCCCTCAACCGCCGTCACTCTAGATTGCTCCGTGTCGCTGCTGCGTCATCATC TCCTTCGTCTTCTCGCTTCGATAGGCATTTCTCTTCTCTCTCCGCTCGTGCTGTAGCTTCGCCCCCTGCTTCGCCGTTATCATCAGATGTTGAAGTTTCT GATGAGGCTGCGGAGGAACTGGGATTTGAGAAAGTGTCAGAACAGTTCATTAATGAGCACAAATCAAGAGCCGTGCTCTTCAGACATAAGAAGACTGGTG CGGAGGTTATGTCAGTGTCAAATGATGATGAGAACAAGGTCTTTGGCATTGTGTTTCGAACCCCTCCAAAGGATTCAACTGGAATTCCACATATACTGGA GCACAGTGTCCTGTGTGGGTCAAGAAAGTACCCTTTGAAAGAGCCGTTTGTGGAGTTAATTAAAGGAAGTTTGAATACGTTTCTGAATGCAATGACCTTC CCTGATAGAACTGCCTACCCGGTTGCTTCCACAAATAAAAAGGATTTCTACAATTTAGTCGATGTGTATCTAGATGCTGTCTTCTTCCCTAAATGTGTGG AGGATGAAAGCATTTTTCAACAAGAGGGCTGGCACTTTGAGCTCGACGATCCTTCCAAAGAGATAACCTATAAAGGTGTTGTCTTTAATGAGATGAAAGG CGTCTATTCTCAGCCAGATAGTGTTATGGGCCGTGCTGCTCGACGTGCTGTTTTCCCGGATAATACCTATGGAGTTGACAGTGGAGGGGATCCAAAAGTT ATTCCCAAACTGACATTTGAAGAATTTAAGGATTTTCATCGCAAATATTATCACCCTAGCAATTCAAGGATTTGGTTTTATGGAGATGATGATCCAACAG AACGGCTGCGTATCTTGAGTGAATATCTGGATATGTTTGAGTCTAGCTCATCTCCGAATGAATCAGTAGTTGAGCCTCAGAGACTTTTTTCAGAGCCAGT AAGAGTTGTTCATAAGTATCCAGCTGGTGATGGAGGTGATTTGAAAAAGAAGCATATGGTGTGCCTTAACTGGTTGCTTTCTGAAAAGCCTTTGGACTTG GAGACTGAGCTTGCACTTGGGTTTTTGGATCATCTTTTGTTGGGAACTCATGCTTCACCACTGATGAAGACCTTGCTAGAAAGTGGTCTTGGAGAAGACA TTGTTGGCGGTGGAATAGAAGATGATCTACTTCAACCGCAATTCAGTATTGGGCTGAAAGGTGTCTCGGAAGATGATGTTCAGAAGGTAGAGGAATTCAT CTTAACTGCCCTGAGACAAATAAGTGAAGAAGGCTTTGAGACGGATGCTGTGGAGGCTTCCATGAACACTATTGAGTTTCACCTCCGAGAAAACAACACT GGATCATTTCCTCGTGGCTTAGCATTAATGTTCCAATCTGTCGGAAAATGGATATATGATTCAGATCCCTTTGGGCCTCTAAAATACGAGAAACCATTGG CAGCACTGAAAGCCAGAATAGCTGAGGAAGGCTCTAAAGCTGTTTTCTCTCCTTTAATCGAGAAATTCATCTTGAACAATAAACATTGTGCCATTGTGGA AATGCAGCCTGATCCAGAGAAAGCTTCTCGTGATGATTCTATTGAGAGGGAAACTTTGGAGAAGTTGAAAGCAAGTCTGACTGAGGAAGACCTTGCTGAG CTAGCACGTGAAACACATAAATTAAAACTGAAGCAGGAAACTCCTGACCCCCCAGAGGCTTTAAAAACAGTTCCATGCCTTCATTTAGATGATATTCCCA AAGAAACTGCTCCTATTCCCATTGAGGTTGGAGAGATCAATGGAGCAAAAGTATTACAGCACGACCTGTTTACAAATGATGTCCTTTATGCGGAAATAGT ATTCAATATGAAATCTCTGAAGCAGGAGCTTCTTCCTTTGGTGCCACTTTTCTGCCAATCACTGCTTGAGATGGGTACAAAAGATATGAATTTTGTTCAA CTTAATCAGCTGATTGGAAGGAAAACAGGTGGTATATCAGTTTATCCCTTCACATCCTCTGTTCGGGATCCTGCTGATCTATGCAGTCATGTAATCGTTA GAGGAAAGGCCATGGCAGCACGTGCTGAAGACTTGTTTAACCTGGTACAATGTGTTCTTCAAGAAGTACAATTCACCGACCAACAGCGGTTTAAGCAATT TGTTTCACAGAGCAAAGCAGGGATGGAGAGCCAATTAAGTGGTGGTGGTCATGGAATCGCAGCTGCAAGGATGGCTGGCAAGTTAACTTCTGCAGGGTGG ATTAAAGAACAAATGGGTGGTGTCAGCTATTTTGAGTTCCTGCAAGCCCTGGAAGAAAGAGTTGATCAAGATTGGGATGGAATCTCTGCATCCTTGGAGG AAATTCGCAAAACCTTGTTATCAAAGGATGGCTGCTTAATAAATTTGACTGCTGACGGGAAGAACTTTGCTGCCTCTGAGAAGTATGTGAGCAAGTTCCT TGATGTTCTTCCTAGCAGTTCACTTGCTAACACTGCGTCTTGGAGTACTCGACTTCCTCCAGGAAATGAAGCTATTGTGATCCCCTCACAGGTTAATTAT GTTGGCAAAGCTGCTAACCTTTTTGAAACTGGTTATCAATTTCATGGGAGTGCATATGTCATCTTAAGACATATTAGCAATACATGGTTGTGGGATAGGG TTCGTCTGATGGGTGGAGCATATGGAGGAATGTGTCAGCTTGATTCTTACTCGGGAATTTTATACAACTTATCTTGGAGAGACCCAAATTTGCTGAAAAC ACTTGATGTGTTTGATGCAACTGGCGATTTTCTGCGTGAGTTAGATATTGATAATGATGCTCTTACAAAAGCCATTATTGGAACCATCGGAGACGTTGAT TCATACCAGTTACCGGATGCCAAAGGTTACAGCAGCTTGATGAGATACTTGCGGGGATCTACCGAGGAAGAAAGGCAACTGAGGCGACAAGAGATACTTT CAACTAGGTTACAAGACTTCAAGGAATTTGCAGACGTGATCGATGCTGTCAAACATAAAGGAGTCTCAGTTGTTGTGGGATCTGCAGGCAACATTGACGC AGCACACATAGATCGCCCCAACTATTTCCAAGTGAAGAAGGTCGTTTGA
AA sequence Show only first row Show all	>Lus10014039 pacid=23156860 polypeptide=Lus10014039 locus=Lus10014039.g ID=Lus10014039.BGIv1.0 annot-version=v1.0 MERTALLRCSSLATNRLFCFPRRLSFSLRRLSASSSRPASSLSSASLRRSLNRRHSRLLRVAAASSSPSSSRFDRHFSSLSARAVASPPASPLSSDVEVS DEAAEELGFEKVSEQFINEHKSRAVLFRHKKTGAEVMSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELIKGSLNTFLNAMTF PDRTAYPVASTNKKDFYNLVDVYLDAVFFPKCVEDESIFQQEGWHFELDDPSKEITYKGVVFNEMKGVYSQPDSVMGRAARRAVFPDNTYGVDSGGDPKV IPKLTFEEFKDFHRKYYHPSNSRIWFYGDDDPTERLRILSEYLDMFESSSSPNESVVEPQRLFSEPVRVVHKYPAGDGGDLKKKHMVCLNWLLSEKPLDL ETELALGFLDHLLLGTHASPLMKTLLESGLGEDIVGGGIEDDLLQPQFSIGLKGVSEDDVQKVEEFILTALRQISEEGFETDAVEASMNTIEFHLRENNT GSFPRGLALMFQSVGKWIYDSDPFGPLKYEKPLAALKARIAEEGSKAVFSPLIEKFILNNKHCAIVEMQPDPEKASRDDSIERETLEKLKASLTEEDLAE LARETHKLKLKQETPDPPEALKTVPCLHLDDIPKETAPIPIEVGEINGAKVLQHDLFTNDVLYAEIVFNMKSLKQELLPLVPLFCQSLLEMGTKDMNFVQ LNQLIGRKTGGISVYPFTSSVRDPADLCSHVIVRGKAMAARAEDLFNLVQCVLQEVQFTDQQRFKQFVSQSKAGMESQLSGGGHGIAAARMAGKLTSAGW IKEQMGGVSYFEFLQALEERVDQDWDGISASLEEIRKTLLSKDGCLINLTADGKNFAASEKYVSKFLDVLPSSSLANTASWSTRLPPGNEAIVIPSQVNY VGKAANLFETGYQFHGSAYVILRHISNTWLWDRVRLMGGAYGGMCQLDSYSGILYNLSWRDPNLLKTLDVFDATGDFLRELDIDNDALTKAIIGTIGDVD SYQLPDAKGYSSLMRYLRGSTEEERQLRRQEILSTRLQDFKEFADVIDAVKHKGVSVVVGSAGNIDAAHIDRPNYFQVKKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	0	1
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10019877 [exp]	1.7	0.9098
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	2.8	0.8989
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	4.0	0.8788
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	4.2	0.8879
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10042432 [exp]	6.2	0.8524
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031272 [exp]	7.3	0.8684
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	8.7	0.8715
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	8.9	0.8577
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	10.8	0.8579
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	11.2	0.8523

Compare expression of checked genes

Lus10014039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.