Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014040 pacid=23156867 polypeptide=Lus10014040 locus=Lus10014040.g ID=Lus10014040.BGIv1.0 annot-version=v1.0 ATGGAGGATTCTTCGAGGAATTGCAAACGATCAGACGGAGGAATTGAATCTTCGGCCGGCTGCTCAAAGAAAACGAAGACCGGCGCCGATGATAAGCTCA GCTCAGCTGAATCGACGAGATTGAGCTCTCCTCGTCCCGATTCCTTCACAAATTCCGACGAGCTTCGGCGCTTCTCGCCGCCTCCCGATTTAAAGGCGGT CTCTCCGACGCCTTCGTTGAATTCATCACCAGACCGAGCCGTCGTCGGCGAATTCTGCTCCGTTGCTCAGTACTCCCGCGCTTCCGGCCATTCCTGCTTC AGCAATGTGGAGTCGAGCGAGGTGGCGGTGAGGGAGGATGATAGCTCCGGACTTGCAGCAGATCTAGAGACCAAGAGTTACGAAACGGAAAGCTCGTCGA CGTGGATTGAAAACAAATCCAGTTGGTTGCCTTCTGAATTCCACTTCCTCTTCTCATCATCCTCCATTGCTTCCCCGTTAAGCAGAGAATCCACTCCCTC CAGTTGCTTCACAGAAAGCAAGACGACGAACACCATGTCAACCACCACCGCCGCCGCCGATTCCCAGATCTCTCTTCCTCCGCCTCCGGTGAACGTCCAG CAGGAGGAGGAAGGAGATCCAACTGCCGAAGAGCTGGACGAGTTCTTCGCCGCAGCGGAGAAGGACGACCAGAGACGATTTGCGGAGAAGTGA
AA sequence Show only first row Show all	>Lus10014040 pacid=23156867 polypeptide=Lus10014040 locus=Lus10014040.g ID=Lus10014040.BGIv1.0 annot-version=v1.0 MEDSSRNCKRSDGGIESSAGCSKKTKTGADDKLSSAESTRLSSPRPDSFTNSDELRRFSPPPDLKAVSPTPSLNSSPDRAVVGEFCSVAQYSRASGHSCF SNVESSEVAVREDDSSGLAADLETKSYETESSSTWIENKSSWLPSEFHFLFSSSSIASPLSRESTPSSCFTESKTTNTMSTTTAAADSQISLPPPPVNVQ QEEEGDPTAEELDEFFAAAEKDDQRRFAEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014040 [exp]	0	1
					Lus10018660 [exp]	4.0	0.8332
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10041548 [exp]	4.5	0.8256
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10025432 [exp]	8.5	0.8022
AT1G71110			unknown protein		Lus10035272 [exp]	12.0	0.8128
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	14.0	0.8268
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	18.3	0.8314
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	19.0	0.7824
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	19.8	0.8240
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	22.8	0.8311
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	24.7	0.8255

Compare expression of checked genes

Lus10014040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.