Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33650 1004 / 0 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 967 / 0 DRP3B dynamin related protein (.1.2.3) AT5G42080 248 / 2e-72 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 243 / 2e-70 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 241 / 7e-70 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G60190 241 / 9e-70 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT3G61760 241 / 1e-69 ADL1B DYNAMIN-like 1B (.1) AT1G60500 146 / 3e-36 DRP4C Dynamin related protein 4C (.1) AT1G60530 115 / 3e-28 DRP4A Dynamin related protein 4A (.1) AT1G53140 45 / 0.0002 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019875 [exp] 1422 / 0 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 1247 / 0 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 1147 / 0 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 1083 / 0 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027905 [exp] 539 / 1e-176 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10023073 [exp] 249 / 2e-72 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10040117 [exp] 252 / 3e-72 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10003873 [exp] 245 / 5e-71 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 240 / 3e-69 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041800 [exp] 1162 / 0 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 1157 / 0 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 367 / 2e-121 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3) Potri.003G141000 [exp] 259 / 3e-76 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 256 / 4e-75 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 252 / 1e-73 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.014G043600 [exp] 247 / 8e-72 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 244 / 1e-70 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 242 / 4e-70 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 234 / 4e-67 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10014041 pacid=23156842 polypeptide=Lus10014041 locus=Lus10014041.g ID=Lus10014041.BGIv1.0 annot-version=v1.0 ATGGTGAACAGGCTCCAGGACATCTTCGCCCAGCTCGGGAGCCAGTCCACGATTGACTTGCCGCAGGTGGCGGTGGTCGGGAGCCAGAGCAGCGGCAAAT CAAGCGTGCTCGAGGCTCTCGTAGGGAGGGATTTCCTGCCTCGCGGGAACGAGATTTGCACGCGCCGCCCGCTGGTCCTCCAGCTGGTGCAGACCAAGAG GAAGGGAGATGGGAGTGAGGAAGAGTGGGGGGAGTTCCTTCATCGGCCTGATAAGCGGTTCTACGACTTCTCTGAGATCCGCAAAGAAATTGAGGCTGTA ACAGCTAAAGAAGCAGGAGATAACAAAGGTGTCTCTGACAAGCAAATCCGTTTGAAAATTTTCTCCCCAACCGTTCTGGATATAACCCTTGTTGATCTTC CTGGCATTACGAAAGTTCCTGTTGGTGATCAACCCACCGATATTGAAGCCAAAATTAGAACTATGATCATGTCATACATAAAAAAACCAAGCTGTCTGAT ATTGGCTGTGACTGCTGCCAACGCTGACTTGGCAAACTCAGATGCACTTCAAATTGCAGGAATCGCGGACCCTGATGGTTACAGGACCATTGGTATAATC ACAAAGTTGGATATCATGGATAGAGGTACTGATGCCCGTAACTTGTTACTTGGGAAAGTGATTCCCCTCCGACTTGGTTATGTTGGTGTGGTGAATCGTT GTCAAGAGGATATTAATCTCAACCGAACTATTAAGGATGCCCTTGCAGCAGAGGAGAAATTCTTTCGCAGCCATCCTGTGTACAATTCGTTGGCTGACCG CTGTGGTGTTCCTCAGCTTGCAAAGAAGTTGAATCATATTTTAGTGCAACATATTAAAGGGATTCTCCCAGTTCTGAAGTCACGGATAAGTGATACGCTG GTTTCCGTTGCAAAGGAGCATGCTAGTTATGGAGAAATCACCGAGTCTAAGGCTGGTCAAGGTGCCTTGCTGCTGACCATCTTTTCAAAATACGGGAAAG CTTTTTCTTCGATGTTGGAGGGAGAAAATGAAGAAACATCAACATCGCAACTGTCTGGTTTAGCGAGAATCAAATATGTCTTCCAGTCAATTTTCGTCAA GAGTTTAGAGGGTGTTGATCCCTGTGAGGATTTGACTGATGATGACATTCGAACTGCCATTCAAAATGCTTGTGGTTCTAATGCTGCTTTGTTTGTACCT GTAATTCCATTTGAAGTTCTTGTCCGGCGGCAAATCGCCCGGCTATTGCATCCGAGCCTTCAGTGTGCAAGATTCATATACGATGAGCTAATTAAGATTA GCCATCGCTGTCTAGCCAATGAACTTCAGCGCTTCCCAGTTCTGAGAAAACGCATGGATGAAGTCATCGGAAACTTTTTGCGGGATGGTCTTGAACCTTC AGAGACTATGGTTGGGCATCTTATTGAAATGGAGATGGACTATATAAACACTGCCCATCCGAATTTCATTGGAGGGACCAAAGCTGTTGAAGTTGCGCAG CAGCAACTGAAGTCCTCACGAGTGAATCCTGCAATCTCCAGGCCAAAGGATGTCACTGAAGTTGATAAAACACCGGCCTCAGAAAGGAGTATGAAGACTC GAGCTATTCTTGGAAGATCTGTCAACGGAGTACGTCAGGTGGCAAATGCTGAGACCATTGTAACATCTGGATCTGGTCCTGGTAGATCTTGGGGCATTTC ATCAATTTTTGGAGGAAATAGTAGTTCCCGTTTCTCATCTGAGAAGACCGCTGCAAGTATGGAATATATGGATGGAGACTATGGAAGTGATTCTTTTAGC AACAGTCTGTCCGTGATTCATTTGCAAGAGCCGCCAGAAATGCTGAGACCTTCAGATACCCCATCGGAGCAGGAATCTATTGAAATCGCAGTCATAAAGT TGCTATTGCGGTCCTACTACAACATTGTTCGGAAAAACGTCGAGGATCTAGTGCCGAAAACCATCATGCACTTTCTGGTACAGCATACCAAACGTGAGTT GCACAATGTGCTGATTAAAAAGCTTTACAGAGAGAACCTATTTGAGGAGATGTTGCAAGAACCCGACGAGATTTCAGTAAAGAGAAAGCAGACACGAGAC ACTCTCAGGGTCCTTCAACAAGCATTTCGAACGTTGGAAGAGCTGCCACTGGAAGCCGAATCAGTGGAGCGGGGACAAAGTTCCGGCTCCGACACCACAG GGCTCCCGAAAATGCGCGGCTTCCCCTTGTCCTCGTCAATCTACTCAACGAGCAACAGCTCCAATGGGTTCTACGCAGGTTCACCGAATAACCAGAAGTC TCGGAAGTCTTCGCACTCGGGTGAACTGCAGTCTCAGTACTACCCCATGGTGGATTCAAATGGAAGGGGAGGAGGTTACATGCCCGGTCTCTATCCGTCA GTTGATTGA
AA sequence Show only first row Show all	>Lus10014041 pacid=23156842 polypeptide=Lus10014041 locus=Lus10014041.g ID=Lus10014041.BGIv1.0 annot-version=v1.0 MVNRLQDIFAQLGSQSTIDLPQVAVVGSQSSGKSSVLEALVGRDFLPRGNEICTRRPLVLQLVQTKRKGDGSEEEWGEFLHRPDKRFYDFSEIRKEIEAV TAKEAGDNKGVSDKQIRLKIFSPTVLDITLVDLPGITKVPVGDQPTDIEAKIRTMIMSYIKKPSCLILAVTAANADLANSDALQIAGIADPDGYRTIGII TKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRCQEDINLNRTIKDALAAEEKFFRSHPVYNSLADRCGVPQLAKKLNHILVQHIKGILPVLKSRISDTL VSVAKEHASYGEITESKAGQGALLLTIFSKYGKAFSSMLEGENEETSTSQLSGLARIKYVFQSIFVKSLEGVDPCEDLTDDDIRTAIQNACGSNAALFVP VIPFEVLVRRQIARLLHPSLQCARFIYDELIKISHRCLANELQRFPVLRKRMDEVIGNFLRDGLEPSETMVGHLIEMEMDYINTAHPNFIGGTKAVEVAQ QQLKSSRVNPAISRPKDVTEVDKTPASERSMKTRAILGRSVNGVRQVANAETIVTSGSGPGRSWGISSIFGGNSSSRFSSEKTAASMEYMDGDYGSDSFS NSLSVIHLQEPPEMLRPSDTPSEQESIEIAVIKLLLRSYYNIVRKNVEDLVPKTIMHFLVQHTKRELHNVLIKKLYRENLFEEMLQEPDEISVKRKQTRD TLRVLQQAFRTLEELPLEAESVERGQSSGSDTTGLPKMRGFPLSSSIYSTSNSSNGFYAGSPNNQKSRKSSHSGELQSQYYPMVDSNGRGGGYMPGLYPS VD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	0	1
AT5G38880			unknown protein		Lus10034622 [exp]	2.0	0.7320
AT1G52155			unknown protein		Lus10025835 [exp]	3.2	0.7968
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	4.6	0.7225
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	14.7	0.6850
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	19.7	0.6762
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030440 [exp]	20.0	0.6609
AT3G04020			unknown protein		Lus10005954 [exp]	21.5	0.6196
AT1G52490			unknown protein		Lus10022939 [exp]	26.1	0.6567
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	29.7	0.6712
AT1G52490			unknown protein		Lus10022937 [exp]	31.8	0.6484

Compare expression of checked genes

Lus10014041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.