Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 74 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 69 / 2e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 62 / 1e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 48 / 5e-06 B3 VDD VERDANDI (.1) AT3G18990 44 / 0.0001 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49480 42 / 0.0003 B3 REM19, RTV1 related to vernalization1 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019871 [exp] 580 / 0 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 368 / 7e-125 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 202 / 6e-60 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 203 / 3e-58 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 200 / 3e-58 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 177 / 4e-51 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 177 / 7e-51 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 167 / 5e-47 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10019353 [exp] 126 / 1e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103300 [exp] 212 / 4e-64 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 207 / 2e-62 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 194 / 6e-57 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 191 / 6e-56 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 164 / 7e-46 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 156 / 6e-43 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 84 / 3e-18 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 84 / 3e-18 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 65 / 6e-12 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 62 / 8e-11 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10014043 pacid=23156803 polypeptide=Lus10014043 locus=Lus10014043.g ID=Lus10014043.BGIv1.0 annot-version=v1.0 ATGCAATCATCCATTTGGGTTCCAGTTCTTCTTTCATCCACAGCCATGACAATCCCTCAAGCTCATCAGATTCAAAAGAGTATGGCGAAGGATTTCTGCG ACGACCATATGCCGATGATGGACCGGATGGTTGAGTTGGAAGATGAAAGTGGACAAGTTTGGTCTGCAAAGTACTTGGCAGGGAAGCAAGGGCTCAGTGG TGGCTGGAGAAGGTTCTCTAATCATCACAAATTGGCTGAAGGAGATGTTGTGGTTTTCGAATTAGTTAAATCAATCAAGTTCAAGGTATGTGCTTTCCGG TATGTGCATTCCGGTTCCAAGGTTCGAACGACAGGATCGTTATGCTACCTGGAAAGAAAGATCTATTGGCTTATGTTATGCAGTACATCTTACTATGGTT CACAAAATTTTCAGGTTTACATAGTGAGGAAAAATGCCTTTGAAAAGCATGATGTTGAGTTACCAAATCCGGATTCCGATGCCCTTGAACCACCCATTGA TACAGAGGATGCCGATAAGCAATGTAACCACGAGAGTGAAGGTCGAGACTTCGAGTTATTACAACCATTAGGAGCAGAAGTTGGGAAAGACGGTGGCAAT GTAGAAAGTAAAAGTTCGGAAAAGGAGACATCGGCCGATCTCAAGGTTCCAAAACCGGCTCCTGATTTCGGACAGGTGAAAAGCTATGAAGATTTCAACA TTGTCACATCAAATGGTTCGATGATCAACAGTGAACTACCCAACCATGTCGAGTTCGGATACTATGCACTTTGCAGTAGTCAGAATTCATATCTGCATCA AAGTATCCTGAAGGACGTCAACAGTAAGCTGATTGCCGGAATGATTGTCGAAACGGTGGACATTGCCAATGCCATGGCGAATTCAGAGGTTGGTACCGTT CGAGGTGAAGATTTCGCGACTTGGGGGAGTAAATTGGACGCTTTCGAGAAGTTGGGTTTGGAAGTCGGGTTTTTACAGGTTCGGTTGAGGGAACTCGTGC GTATATTCGACAAGGCAGACAAGTACAAGAAGCTCGGTGCGGAAAGAGGTCATGTTGCGGAGAAGGTGGCAGACTTGGAGGCACAACTTGGAGAAGCCAG AGGGGAACTGGAGAAATTAGATAGTGAGATTGAGAGATTAGGGTTTGATGGAAAAGGTGTTGAACTTGCTTTTGTAGAGTTGGCTGCTGCTCCCTGGTCA TGA
AA sequence Show only first row Show all	>Lus10014043 pacid=23156803 polypeptide=Lus10014043 locus=Lus10014043.g ID=Lus10014043.BGIv1.0 annot-version=v1.0 MQSSIWVPVLLSSTAMTIPQAHQIQKSMAKDFCDDHMPMMDRMVELEDESGQVWSAKYLAGKQGLSGGWRRFSNHHKLAEGDVVVFELVKSIKFKVCAFR YVHSGSKVRTTGSLCYLERKIYWLMLCSTSYYGSQNFQVYIVRKNAFEKHDVELPNPDSDALEPPIDTEDADKQCNHESEGRDFELLQPLGAEVGKDGGN VESKSSEKETSADLKVPKPAPDFGQVKSYEDFNIVTSNGSMINSELPNHVEFGYYALCSSQNSYLHQSILKDVNSKLIAGMIVETVDIANAMANSEVGTV RGEDFATWGSKLDAFEKLGLEVGFLQVRLRELVRIFDKADKYKKLGAERGHVAEKVADLEAQLGEARGELEKLDSEIERLGFDGKGVELAFVELAAAPWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	1.0	0.9411
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10020642 [exp]	3.2	0.9185
AT2G40435			unknown protein		Lus10017415 [exp]	3.5	0.8993
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	4.2	0.9077
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	5.2	0.8889
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	6.3	0.8524
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	6.7	0.8988
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	8.5	0.8959
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10007761 [exp]	8.5	0.8441
AT3G23255			unknown protein		Lus10011825 [exp]	8.8	0.8807

Compare expression of checked genes

Lus10014043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.