Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 214 / 3e-68 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 162 / 4e-49 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 106 / 8e-27 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 46 / 2e-05 B3 VDD VERDANDI (.1) AT2G23530 46 / 2e-05 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G49480 44 / 8e-05 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 44 / 9e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G26680 43 / 0.0002 B3 REM17 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019870 [exp] 369 / 1e-127 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10006483 [exp] 194 / 4e-61 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10009764 [exp] 193 / 9e-61 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 146 / 1e-39 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10017434 [exp] 138 / 7e-38 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10007522 [exp] 128 / 1e-33 AT5G58280 206 / 9e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 122 / 2e-31 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 119 / 2e-30 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 112 / 1e-27 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103100 [exp] 244 / 2e-80 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 223 / 3e-72 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 183 / 8e-57 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 183 / 8e-57 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 140 / 3e-38 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 129 / 3e-34 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 122 / 1e-33 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 126 / 6e-33 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 126 / 1e-32 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 112 / 1e-27 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10014044 pacid=23156823 polypeptide=Lus10014044 locus=Lus10014044.g ID=Lus10014044.BGIv1.0 annot-version=v1.0 ATGGTGGAATCGAAGAAGAAGCTGATGAGCTACGAAGAAACCCGGCTGCAAAGGCTGGAAGAGAACAGGAAGAGGATGGAAGATCTCAACTTGCTCAAGC TTGCTCGCCATCTTCGCCCCCAACATAAATCCTCGCCTGCCAAGCAGGCGAAACCGCGAGCTCCTAAGGCGGTGCTGGGTCCGGCGAGAAGGTCATCTCG GATAGCTGACAAGCCTAGTGTTAGCTACAAGGAAGGTATGGTGGAGCCGTTAGAAGGACTCAGAGTCGGAAGGAGTGCTCGCTACCATAGAAGAAGCGAT CGAGTGTATGCATCGCGTAAAGCAAGGGAGAATGCAAATGAGAGAGCTGAAGAACTTGAATCAATTTTGGAGAAGGAGTACCCGACTTTTGTGAAACCCA TGTTGCAGTCCCATGTTACGGGAGGGTTTTGGCTGGGGCTGCCATGTGGGTTCTGCAAAACTCACCTTCCTAAGAACGATGAGATGATGACTCTGATAGA CGAGGATGGAGAGCCATCTGAAACAAAGTACCTTGCTCATAAAAACGGTCTGAGTGGCGGATGGAGAGGGTTCGCCATTGATCATGAACTGGTTGATGGA GATGCACTAGTTTTCCAACTGATCAGCCCCACAGAATTCAAGGTGCATATAATCAGGGTAAATGACGTAGAAGACGGTGATGATTCCGAGAAGGAAACTC AAGCAGAGGAGGAAGAAGATGATGATTCAGATAAGGAAAATCAGGAAGGGGAGGAAGTTGATTCTGAGAAAGAAAACCAGAAAGAGGAACAAGATGATTC TGATGTCGATGATGTCACTAGGAGGAGGTCCAAACGACTCAGGGCAGGTAATTGCTTTAATAAAACTGTTGATATCTTGGGATCCGTGGCCCTTCTCTGG TTAAGCAAGTTCATTTAA
AA sequence Show only first row Show all	>Lus10014044 pacid=23156823 polypeptide=Lus10014044 locus=Lus10014044.g ID=Lus10014044.BGIv1.0 annot-version=v1.0 MVESKKKLMSYEETRLQRLEENRKRMEDLNLLKLARHLRPQHKSSPAKQAKPRAPKAVLGPARRSSRIADKPSVSYKEGMVEPLEGLRVGRSARYHRRSD RVYASRKARENANERAEELESILEKEYPTFVKPMLQSHVTGGFWLGLPCGFCKTHLPKNDEMMTLIDEDGEPSETKYLAHKNGLSGGWRGFAIDHELVDG DALVFQLISPTEFKVHIIRVNDVEDGDDSEKETQAEEEEDDDSDKENQEGEEVDSEKENQKEEQDDSDVDDVTRRRSKRLRAGNCFNKTVDILGSVALLW LSKFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	0	1
					Lus10018751 [exp]	4.1	0.7942
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Lus10024262 [exp]	8.1	0.7787
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	8.7	0.8492
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	21.2	0.8409
					Lus10037800 [exp]	21.5	0.7283
AT1G13690		ATE1	ATPase E1 (.1)		Lus10026675 [exp]	21.7	0.7426
AT1G74350			Intron maturase, type II famil...		Lus10017036 [exp]	23.6	0.7715
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	25.4	0.8279
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	25.8	0.8023
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	26.9	0.8192

Compare expression of checked genes

Lus10014044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.