Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19190 1152 / 0 ATATG2 autophagy 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019868 [exp] 3292 / 0 AT3G19190 1357 / 0.0 autophagy 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102900 [exp] 1444 / 0 AT3G19190 1477 / 0.0 autophagy 2 (.1) Potri.004G141700 [exp] 1399 / 0 AT3G19190 1412 / 0.0 autophagy 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09333 [flax] [poplar] ATG_C Autophagy-related protein C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014045 pacid=23156829 polypeptide=Lus10014045 locus=Lus10014045.g ID=Lus10014045.BGIv1.0 annot-version=v1.0 ATGTTCCCGTGGAACATCGCGAAGTCGGCGGAAGCAGTCTTATCGCAGTGGGCGCTGAAGAGGCTGTGTAAGTTTGTGCTGAAGAAGAAGCTAGGGCAAT TCATTTTGGGGGAAATTGATCTTCAGCAGCTTGATGTTCAGCTTGGTCAAGGTGTGATCCAGCTCAGCGACCTTGCTCTTGATGTTGATTATCTTAATGA GAAGTTTGGTGCAGAAGCATCTGTGGTTATAAAGGAGGGATCAATAGGCTCTCTTTCGGTTAAAATGCCTTGGAAGGGTAATGGTTTTGAGGTTGAGGTG GATGAGCTTGAGCTTGTTTTTGGACCCTGTTTAAAAAATGAAGCATTGATTGTTGGTGATAAATTTCGTGCCAGTCAAGATAAAAGAACGAGCATGCATG ATGAGATGCGAAAACTTGGCAGTGTTTTGGACCCTGCAGCAAGATCGGGTTCTGTTGATATCCATGAAGGCGTGAAGACAATTGCGAAAATGGTTAAATG GTTCTTAGCAAGCTTCCATGTGCGTGTTAAGAAATTGCTGGTTGCGTTTGATCCATACTTGGAAAGTGAAAAGGAAGCGGGCTGCCACAAAATCGTGGTT TTACGCATAGCTGAAGTGGAATGTGGAACATGCGTTTCTGATGATGTTGGTTCGACCACTAATGGAACCACTGATGATTTGCTCGGAATCAGTCGATTGA CAAACTTTCTTAAATTTCAAGGTGCAGTGCTTGAACTCCTAGAAATGAATGATGCCAAAAGAGAATCTGTGTTATCTAAATCATTATCAGGTTCGACTTT CAATGAGGTTCCTGCAAATGTAACAATGCCTATCTTGTTGGGGAGTAAGGATGGATTTTCCGGGGAATTGAAGTTGAGTATACCCTGGAATAATGGTTCT CTAGATATTCGCCAAGTGGATGCAGATATTTGTATAGATCCCGTGGAATTGAGAGTTCAGCCTGGTACTATTAAATATTTCCTTCTTGTGTGGGAAGCTT ATAAGATCTTGAACAGGGATTCTGCTCTCAATTCACAGTCTAAGCCTGTGGACTCTGTTTACTTCAATTCACCTTCTCAGTTGTATCCATCAACCCATAA TTCTGCTTCCACACCAGCTGCAAATTTTTTTTGTGCTCCTGGTACTTCTCCACGGGTACAACAATCCTTCTGTGATTCGGTTCTTCCTGGATCACATCTT ATACCTGACTGGATGCCGACATCTGTTAAAGATGGTGTGCAGGAGCTTGACCTTGGAGCAAGCGTGGATCAGTTCTTTGAGTGTTTTGACGGAATTAGAA ATTCACAGTCAGCTTTGGGTAGTAGTGGGATGTGGGGCTGGACATGCTCAGTATTTGGTGCATTAACTGCTGCTTCCAGCCTTGCTTCTGGTTCTTTGCT CGTTACATCTGAGCAGCAGCATATGCAGACGAATCTCAAAGTCCGTTGGACTGGAATTTCTGTTGTTTTATTGTTCCAAGATGAAAACGAGCAGCGTTGC TGCAAATCAACCGGGGACCAACGTAGTCTGAAACCTCATTATGTTACTGCTGAGTGCAAGGACATTTCAGTTGTTGTGCAGGTAAGTCCACAACAAATAA TTATTGATGGTCATGTGAAATGTATCGAGGTTTCTGAAAACTCACAGAGTGGAAATGGCGGTATGTTCTTCCCTGGGTCTTCTACTAATGGACAGGATGA GACTCTTCAGATTCAGCATCTGCAAGCTGCTCTACTTAGTGCTCTCCCATCGGCCAATAATCTAAATTCAGATGATTGGAATACTCCGCATGCTTCTGAT ATTCATGCTGGAAGAACAAAAGTTAAAATGCTCAGTACCTCAGGTGTTACTCATTGCCAATTTGTTGTAAGTTCAGATTCATCTCACCGAGATGCGAAAG TACCAGCATCTTTTTCATTGCATCTCCCACACTTTGTGTTCTGGGTGAACCTTATTTCGATAAAGATGCTAATGGATCTTGTTGAAGATGTGTCAAGTGC TGTTAGTACCAGTAGCGGGAGCGATGAATTTAAAACTTCCAGTGAGAAGCGTGGCTCTACAGTTCATGAATCCAGAGGAGATGTGGAAGCATCATCTTCA ACCGAAAACTGGCAGTGTAACATTTCAATTCCCAGTGCAAGGATAATACTCTGTTTTCCATTAGAAATGGACAAACTAATGCAAAACAGCTGGTGCTGGG ATCAGTTTGTTGCAATTGATTTCTCTTCTCCATCTGTCCGGGAGAGAGGGAAAATACAGGGTCACAGCCCTGTAGCTGATTCCACATCATGGAGACGGTA TATTTCAAAGCCTGCATGGTCTGTGTATGTATCTGTTGGGGATCTAAGAGTTTATTTGATCAGTTCCAGAAAAAATGATGACGCAGTTATGGCTAGGATG ACATTCTGCGTTCAGAAGGTTTTATCTGTCAGCAATAGAGGTGGGTGTCTTTCTACAGTTAGCATAGTATCTCAGGATACTGTTATGACTGGTCCTTGGG TTGCCGAGAGAGCTAAGTTCATGGCTACTGCAGAAGAGTCCAGGATGAGAGGAAACAACAACGCTAAAGGTCATGAATTTGCAACAGTGACAGCCGTGAA AGACACAGATGATATGAGTTCTCGAACTCGCAGGGACATCTTGTTGACCTCTGCTTTTGTTTTACATGTTCATCTACCTCCTTGTATCATTGACATGGAT AGTTCTCAGTATTGTAAGCTGGTTCTTCTGATTGGGCATATGATAAAAGGGTTGTCATGTACACCCTTGGAATCAGTTAGTCTAGATGAAGAACCATCTG TTTCGCAGACATCAGTCCTAGTGGAGTGTGATTCACTAGAAGTTTCAATTAGACCAGACACAATGGAGGAAAGACACAGTTCCTTGCAAAGTGAACTTCC TGGATCATGGCTATGTTTCAAACTCAAAATTCGGAAACTTGAATTGATGTCTGTCTCGAGAATTGGAGGCATCGAAGATGCTACTTTCTTGTGGATAACC CACAGAGAAGGTAAACTATGGGGATCAGTCACTAGCAACCCAAGCAAAATGTTTCTTCTCATATCATGCAGCAACTCTTCCAGGAAACGTGGGGATGGAG GCGGTTCAAATGCATTGTCTTCTCGGTGGGCTGGTTCTGATATTGTCCACCTATGTGTTCCAGAGGCTATTCGTTCAATTACATCTATTACAATCAGATG TGCGACAGTTGTGGCTGTTGGTGGTCGGTTGGACTGGTTTGATGCAATATTTTCTTTCTTCAATTTGTCCTCTCCTGAAGTTGTAAACACAGATCACACT AATCTGCGGGAAGGTCTCCAACCTACACACCAGACATCTTTCCTTCTAAAGTTGGTTGATATTGGCTTAAGTTATGAACCACAATTGAAGAGTTCAATAT CAACGGATCACAGTTCTTTCTCTAGTTCCTTAAATACAGGAGAGAATGATGTGGGGCCGTATTTTGCGTGTCTTATAGCTGCTTCTTCCTTGACAGTATC CACTACTGCAATGGAAGATTCTGTGGACAATGACTACAAAATAAGAGTACAAGATCTAGGATTCCTTCTTTCTAAGGCACCTCATAATCCTGGTGGTATT TACAGTGTGGATTACCTTCGTGATATGAGATATGTTAAAGTTGCTCAAGAAGCCCTTATAGAAGCCGTTTTGAGAACTAACAGTGAGAATGGTCTTCAAT GGGAGTTAGAGTGTTCAAAGCTCCATGTTTGGATGAACACTTGTCATGATACTACGTCAGGACTTACTGGATTAGCTGCTCAACTGCAGCAGCTTTTTGC TCCTGACTTGGAGGAATCAGTTGTGCACTTGCAAGCTCGGTGGAACAATTTCTGTGAGGCGCAAGAGAAGAGCAAGTTTAACGAGGAAGGTAAGGCTATC GTTTATGATTCCACCACAGCAACCTCTGAAGTGTTTGGCCCAAGTGCTTTCACTGTGAACGAACATAAGGCTGTAGTTGGGTTGATGGATGAGATATGTG GAGATGCATTTTCCTTGGATGCAAAGCAGAAGCAGGCCTGTCAACTTGATTCGGCTGGACCCGGTCTTTGTTTGCCACCTGCTGATAGCATCTTTGGGCA GCCTTATGGAATAGGTTATGAAGTTCAAGATAATTTCAAGATAATTTCTTGTGAACAGTCGTCATCAGTTGGCGTGGATAGAACTGAATCATCATTTTTA GAGAATGGTTCCTTGCCGGAATTTATAGAAAGCTATTGCATATCTGACTTACGCCCTTTGTCAGAACTATCTATAGGCAGCATAGATCCCCCTGCTCGGG TAAACAGTGGATGGTACGAAGAGTTGCCTGTAAGCATTGTAGAGGACCACATTTCAGATACTGGTGGGAGTGGTTACCTGAACCAGTTTCTTGATGACAA GTTTCTGGAGGGCTTCTCTTTAACATCAGATCATTCTGAAAAGGCTACAGGGCGTGTACTTCTGAAGGACATAAATGTGAGCTGGAAAATGTATGCTGGT TCTGACTGGGATCCACACGGCATGAACACTGAGCCATCTAAATGTACTGGTGGAAGGGACACAAGTACTTGTCTAGAGCTTTCACTATGTGGGATGGAGT TACGTTGTGAGTTGTTCCCACTGACGGGAGTATGTGCATCTAAGATTTCAATTTCCATTCAGGACTTCAATCTTCCTTTGATTTCACCACATTCGAATTT CCAGATGTTTGGATATTACCATTCAAAAGATCATCCTAGGACAACAAATGCCAAAGCGCTCAAGCTGGACTTAGAAGCTAAATTTGATGTATGCCCTATT CTTATACGGGTCGATTACACACCTAGTCGTGTTGATTTAACAGCATTAGGAGGTGGGAAGTATGTGGAACTTGTAAACCTTGTTCCTTGGAAGGGGGTTG AACTCGAGCTTAAACACGTACATGCTTCTGGTATCTATGGCTGGGAAAGCGCATGTGAAACAATGTTCGGGGAGTGGCTGGAAGATATATCACAAAATCA GGTACGAAAGATCTTACGAGGCCTCCCCACTATACGATCCTTTGTTGCAGTTGGTTCTGGGGCTGCAAAGCTCGTATCACTGCCAGTTCAGAGCTATAAG AAAGATCAGCGAGTCCTCAAGGGAATGCAAAGAGGTACAGTTGCATTTCTTAGAAGTATATCACTTGAAGCTGTCGGGCTTGGAGTGCATTTGGCAGCTG GAGCACATGATATTTTACTTCAAGCCGAGTATATCCTCACCAGTGTTCCTTCCCCAGTATCATCATCGTCCTCCACACAGGGAAAAAAGAAGTCAAATGT AAGAAATAATCAACCAAAAGATGCCCAAGAAGGAATCCAAAAGGCTTGTGCGAGCATCAGTGATGGCCTGGGGAAAACAGCTTCTGCACTAGTTCGAACA CCGCTGAAAAAATACCAATACGGGTCCAGTGCTGGATCCGCATTGGCAACTGCAGTAAGGGGCATTCCTGCTGCTGCTATTGCTCCAGTCTCTGCCTGTG CCAGTGCTGCACATTACGCTCTTCTTGGACTTAGAAATAGGTGA
AA sequence Show only first row Show all	>Lus10014045 pacid=23156829 polypeptide=Lus10014045 locus=Lus10014045.g ID=Lus10014045.BGIv1.0 annot-version=v1.0 MFPWNIAKSAEAVLSQWALKRLCKFVLKKKLGQFILGEIDLQQLDVQLGQGVIQLSDLALDVDYLNEKFGAEASVVIKEGSIGSLSVKMPWKGNGFEVEV DELELVFGPCLKNEALIVGDKFRASQDKRTSMHDEMRKLGSVLDPAARSGSVDIHEGVKTIAKMVKWFLASFHVRVKKLLVAFDPYLESEKEAGCHKIVV LRIAEVECGTCVSDDVGSTTNGTTDDLLGISRLTNFLKFQGAVLELLEMNDAKRESVLSKSLSGSTFNEVPANVTMPILLGSKDGFSGELKLSIPWNNGS LDIRQVDADICIDPVELRVQPGTIKYFLLVWEAYKILNRDSALNSQSKPVDSVYFNSPSQLYPSTHNSASTPAANFFCAPGTSPRVQQSFCDSVLPGSHL IPDWMPTSVKDGVQELDLGASVDQFFECFDGIRNSQSALGSSGMWGWTCSVFGALTAASSLASGSLLVTSEQQHMQTNLKVRWTGISVVLLFQDENEQRC CKSTGDQRSLKPHYVTAECKDISVVVQVSPQQIIIDGHVKCIEVSENSQSGNGGMFFPGSSTNGQDETLQIQHLQAALLSALPSANNLNSDDWNTPHASD IHAGRTKVKMLSTSGVTHCQFVVSSDSSHRDAKVPASFSLHLPHFVFWVNLISIKMLMDLVEDVSSAVSTSSGSDEFKTSSEKRGSTVHESRGDVEASSS TENWQCNISIPSARIILCFPLEMDKLMQNSWCWDQFVAIDFSSPSVRERGKIQGHSPVADSTSWRRYISKPAWSVYVSVGDLRVYLISSRKNDDAVMARM TFCVQKVLSVSNRGGCLSTVSIVSQDTVMTGPWVAERAKFMATAEESRMRGNNNAKGHEFATVTAVKDTDDMSSRTRRDILLTSAFVLHVHLPPCIIDMD SSQYCKLVLLIGHMIKGLSCTPLESVSLDEEPSVSQTSVLVECDSLEVSIRPDTMEERHSSLQSELPGSWLCFKLKIRKLELMSVSRIGGIEDATFLWIT HREGKLWGSVTSNPSKMFLLISCSNSSRKRGDGGGSNALSSRWAGSDIVHLCVPEAIRSITSITIRCATVVAVGGRLDWFDAIFSFFNLSSPEVVNTDHT NLREGLQPTHQTSFLLKLVDIGLSYEPQLKSSISTDHSSFSSSLNTGENDVGPYFACLIAASSLTVSTTAMEDSVDNDYKIRVQDLGFLLSKAPHNPGGI YSVDYLRDMRYVKVAQEALIEAVLRTNSENGLQWELECSKLHVWMNTCHDTTSGLTGLAAQLQQLFAPDLEESVVHLQARWNNFCEAQEKSKFNEEGKAI VYDSTTATSEVFGPSAFTVNEHKAVVGLMDEICGDAFSLDAKQKQACQLDSAGPGLCLPPADSIFGQPYGIGYEVQDNFKIISCEQSSSVGVDRTESSFL ENGSLPEFIESYCISDLRPLSELSIGSIDPPARVNSGWYEELPVSIVEDHISDTGGSGYLNQFLDDKFLEGFSLTSDHSEKATGRVLLKDINVSWKMYAG SDWDPHGMNTEPSKCTGGRDTSTCLELSLCGMELRCELFPLTGVCASKISISIQDFNLPLISPHSNFQMFGYYHSKDHPRTTNAKALKLDLEAKFDVCPI LIRVDYTPSRVDLTALGGGKYVELVNLVPWKGVELELKHVHASGIYGWESACETMFGEWLEDISQNQVRKILRGLPTIRSFVAVGSGAAKLVSLPVQSYK KDQRVLKGMQRGTVAFLRSISLEAVGLGVHLAAGAHDILLQAEYILTSVPSPVSSSSSTQGKKKSNVRNNQPKDAQEGIQKACASISDGLGKTASALVRT PLKKYQYGSSAGSALATAVRGIPAAAIAPVSACASAAHYALLGLRNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	0	1
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	1.4	0.9467
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	2.8	0.9366
AT4G12010			Disease resistance protein (TI...		Lus10030839 [exp]	3.2	0.8760
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	4.2	0.8912
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	5.5	0.9235
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	5.5	0.8918
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	7.7	0.8661
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	8.5	0.9021
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	9.5	0.8911
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	11.0	0.8621

Compare expression of checked genes

Lus10014045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.