Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19210 1208 / 0 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT1G08600 263 / 8e-73 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT1G03750 243 / 9e-68 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT2G18760 244 / 4e-67 CHR8 chromatin remodeling 8 (.1) AT5G63950 231 / 1e-62 CHR24 chromatin remodeling 24 (.1) AT3G06400 223 / 5e-60 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT3G06010 221 / 2e-59 ATCHR12 Homeotic gene regulator (.1) AT5G18620 220 / 4e-59 CHR17 chromatin remodeling factor17 (.1.2) AT2G13370 221 / 6e-59 CHR5 chromatin remodeling 5 (.1) AT5G19310 214 / 2e-57 Homeotic gene regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019866 [exp] 1757 / 0 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10003543 [exp] 256 / 5e-71 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 250 / 6e-69 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10033669 [exp] 245 / 3e-68 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10015690 [exp] 234 / 7e-64 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 233 / 2e-63 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10009711 [exp] 227 / 5e-61 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10034064 [exp] 223 / 4e-60 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10032785 [exp] 223 / 8e-60 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141500 [exp] 1297 / 0 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.013G048500 [exp] 268 / 2e-74 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 254 / 6e-70 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.008G149900 [exp] 243 / 7e-67 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.005G226500 [exp] 241 / 3e-66 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.017G012400 [exp] 238 / 7e-66 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.010G091200 [exp] 236 / 2e-64 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.005G066600 [exp] 230 / 2e-62 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 228 / 9e-62 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.001G253400 [exp] 223 / 1e-59 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014047 pacid=23156781 polypeptide=Lus10014047 locus=Lus10014047.g ID=Lus10014047.BGIv1.0 annot-version=v1.0 ATGAGAGCTCCAGCCCGGACTCCGACGAAAGAAGACAACGGGGAAGCAGAGGAAGAAGCAGGAACAGAAACCGACATCGACTCCGATGAGGAGGAATCGT TGTCCGATCCAACTGATTCCGGCGACGAGTACACTGGCGACGGCGAAGAACAGCGGCCCGGGGAGAAAGCTGCGGTGCCCGATCGAGCTAGGAAATCGGA GAACGTGGATGCTCTCGTTAGGGGAAACCTAGTAGTGAGAAGGCAATCGCTGCTTCCTCGAGTTCTTTCAGTGACGGATGGGGCAGCCGTTTGCAGGAAG CCCTTTAAACCCCCTTGTTCGAGTGGATATGCTGATAGTAGCGAAAAACTGATTCGCCGTCTTGGTGCGCGTAAACGCTTCGTCCCGTGGGGTTCTTCCA CGCCCATTGTGATTCCAAGCTCTAATAGAATTAGCTTGCCCGATGATGTTGAGAAAGAAGCAGAGGAGGAAACCGTGGCTTTGCCACCAGGGGTTGAACC TTTAGTTCTGTGGCAACCTTCAGAGCCTGGAGATGGAGCTATAATGGTGGATCAATTGCTTGTTCAGTTCCTTCGGCCCCATCAAAGAGAAGGGGTTCAG TTCATGTTTGAGTGTGTTTCTGGGCTTAATAGTGCTGCCAATATTAATGGATGCATTCTAGCTGATGATATGGGTTTGGGGAAAACATTACAATCAATCA CTTTGTTGTATACTCTACTCTGTCAAGGATTTGATGGGAAGCCAATGGTTAAAAAGGCTATAATCTGCACTCCGACCAGTCTTGTGAGCAATTGGGAAGC TGAAATAAAAAAGTGGATTGGTGAGAGGGTTAAGCTCATAGCTTTATGTGAAAGCAGCAGAGAAGATGTTGTCTCCGGGATAAATAGTTTTGCAAGTCCT TTCAACTCTACTCAGGTCCTGATTGTTTCTTATGAGACTTTCCGGCTGCATTCGACAAAATTCAACCGTGAAGGATCCTGTGACCTTCTCATATGTGATG AGGCCCACAGGTTAAAGAATGATCAGACATTAACTAATCGGGCATTGGCAGCTCTCTCGTGCAAACGACGGATTCTATTGTCAGGGACGCCTATGCAGAA TGACCTAGAAGAGTTCTTTGCAATGGTTAATTTCACCAATCCAGGGATTTTGGGAGATGCAGCATACTTTCGTCGTTATTACGAGGCACCTATAATCTCT GGAAGAGAGCCAACAGCTACCAATGATGAGATGAACCTTGGTGTTGAGCGCTCTGCGGAACTAAGTGCTAAAGTAAACCAGTTCATACTGAGGAGGACCA ACGCTCTGTTGTCAAATCACCTGCCACCGAAGATAGTTCAAGTTGTTTGTTGCAAATTGACCCCTCTCCAAGCAGAAATATATAACCATTTCATACATTC CAAAAACGTAAGGTTTCAAGCTTATCATGTGGTTAAACGTGCAATTAATGAAGAAGCAAAAAAATCTAAGATTCTGGCTTACATTACTGCTCTGAAGAAG CTCTGCAATCATCCAAAGCTCATCTATGATACTATAAAGAGCGGAAAACCGGGAACTTCAGGGTTTGAGGATTGCCTTCGCTTTTTCCCTCCATCGATGT TTTCTGCAAGATCTGGATCTTGGAGTGGCGGTGATGGTTCTTGGGTTGCACTGTCTGGTAAAATGCATGTCTTGGCTCGGTTACTGGCTCATTTACGTCG GAGAACAGATGACCGAATTGTTTTAGTATCGAACTACACTCAGACGTTGGACCTTTTCGCTCAACTGTGTCGTGAAAGAAGGTACCCACACATACGGCTT GATGGAGCAACTTCAATCGGAAAAAGACAAAAGTTGGTTAATCTCTTCAATGATCAATCAAAGGATGAGTTTGTATTTCTCTTAAGCAGCAAGGCAGGTG GATGTGGACTCAATCTCATTGGTGGAAATCGGCTCGTCTTATTTGACCCAGACTGGAATCCTGCCAATGACAAACAGGCTGCTGCTAGAGTTTGGCGTGA TGGACAAAAGAAGAGGGTATATATCTACAGATTTCTCAGTACAGGAACCATCGAAGAAAAGGTTTATCAGCGTCAAATGTCAAAGGAAGGCCTGCAAAAG GTTATCCAGAACGAGCGCAATGATAGCAATGAGAAACAGGTTAACCTCCTTTCTGCAGACGATTTACGTGATCTTTTCACCTTCCATGAGAATGTCAGGT CAGAAATTCACGAAAATATGAACTGTGTCCGCTGCCTAGTAGACGGCAATGACGAACCAAAGAGCATGGGAAATGAAGATGCATCGGAAAATAATAAGCA GTCCAGTGAAGATGGGTCTGATATCGGTGGATTTGCAGGCATATCAGGATGCGTAGATAAATTGAAAAGTTCAGAGAAACAGGTAGGGACTCCATTGGAA GAGGATCTAAGCAGCTGGGGGCATCACCTTCAACCAGCGTCTGTGCCTGATTCTATACTTCAAGCTTCTGCTGGAGATGAGGTTACATTTGTTTTCACAA ACCAAGTGGACGGGAAGCTCGTACCTATCGAATCAAACCCATCGACAAAGATCCGGTTCGACGATAAGGAAAATCGGAACGAGGGCCAGGTTACAAAGTC AATCCTATTTGCAAAGCCAAGGCAATCCATTTCTCCATGTGCTAATTCTTCCCCCATATTATTCCAACAACCTCCTATGCAAAGAGCAACGCTGAAACGA TCAAGAACACCGTTGAAGGGAATCGGAAATGCTGAACTCAAATCCGAACTTGCTTTCTCTGCGAAAAGACCATCTCCTTGCGATATAGCGGTAGACAATG CCGATGATTTTGCTTGA
AA sequence Show only first row Show all	>Lus10014047 pacid=23156781 polypeptide=Lus10014047 locus=Lus10014047.g ID=Lus10014047.BGIv1.0 annot-version=v1.0 MRAPARTPTKEDNGEAEEEAGTETDIDSDEEESLSDPTDSGDEYTGDGEEQRPGEKAAVPDRARKSENVDALVRGNLVVRRQSLLPRVLSVTDGAAVCRK PFKPPCSSGYADSSEKLIRRLGARKRFVPWGSSTPIVIPSSNRISLPDDVEKEAEEETVALPPGVEPLVLWQPSEPGDGAIMVDQLLVQFLRPHQREGVQ FMFECVSGLNSAANINGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKKAIICTPTSLVSNWEAEIKKWIGERVKLIALCESSREDVVSGINSFASP FNSTQVLIVSYETFRLHSTKFNREGSCDLLICDEAHRLKNDQTLTNRALAALSCKRRILLSGTPMQNDLEEFFAMVNFTNPGILGDAAYFRRYYEAPIIS GREPTATNDEMNLGVERSAELSAKVNQFILRRTNALLSNHLPPKIVQVVCCKLTPLQAEIYNHFIHSKNVRFQAYHVVKRAINEEAKKSKILAYITALKK LCNHPKLIYDTIKSGKPGTSGFEDCLRFFPPSMFSARSGSWSGGDGSWVALSGKMHVLARLLAHLRRRTDDRIVLVSNYTQTLDLFAQLCRERRYPHIRL DGATSIGKRQKLVNLFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQK VIQNERNDSNEKQVNLLSADDLRDLFTFHENVRSEIHENMNCVRCLVDGNDEPKSMGNEDASENNKQSSEDGSDIGGFAGISGCVDKLKSSEKQVGTPLE EDLSSWGHHLQPASVPDSILQASAGDEVTFVFTNQVDGKLVPIESNPSTKIRFDDKENRNEGQVTKSILFAKPRQSISPCANSSPILFQQPPMQRATLKR SRTPLKGIGNAELKSELAFSAKRPSPCDIAVDNADDFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	0	1
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	1.4	0.9726
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	2.4	0.9620
AT1G71760			unknown protein		Lus10004010 [exp]	2.8	0.9283
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	3.5	0.9422
AT5G60370			unknown protein		Lus10023343 [exp]	4.2	0.9257
AT1G04650			unknown protein		Lus10011755 [exp]	4.9	0.9382
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10006381 [exp]	5.3	0.9134
AT4G15790			unknown protein		Lus10004794 [exp]	7.7	0.8762
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10016562 [exp]	9.9	0.8891
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	10.1	0.9318

Compare expression of checked genes

Lus10014047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.