Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17930 679 / 0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G80930 66 / 7e-11 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019865 [exp] 842 / 0 AT5G17930 621 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10002210 [exp] 66 / 1e-10 AT1G80930 909 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10003392 [exp] 56 / 2e-07 AT1G80930 491 / 1e-162 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10011226 [exp] 53 / 3e-07 AT1G80930 266 / 2e-83 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061400 [exp] 821 / 0 AT5G17930 735 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Potri.016G121100 [exp] 63 / 8e-10 AT1G80930 879 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10014048 pacid=23156815 polypeptide=Lus10014048 locus=Lus10014048.g ID=Lus10014048.BGIv1.0 annot-version=v1.0 ATGGTAGGTGAGTCACGCCGAGAGAAGCGGAAAGAAGCCAGGCAGGACGCGAAGCAGAGAAGGAATGATTCTTGGTTGGCACATCAGCAATCTAAAGCTG AAAAGATCAAAGCAAAGTCCGCCAAGTCGAAGCGAAAAAATGTGGATAAATCAAACACCTCGGTGGCGCAGAGTAGACAGCTAGATGCTCAGTTACAGGG AGAACGTGATTCAGATAGAACGACTACTCAAGCAATTATGAAAGCACCTCTTGTTCCTCAACGTACCGTTAAAGAAAAGCAAAGTTTGAAGAGAAAGCCA CAGACAGGTTTTGAAGAGTTTCTTAGTATGGATATGCAACAAGATGAAATATCAGCACAGTACGATCTTGAAGTTGAAAAACGCCTTGCTAAGAAGCTTA AGGTGAAGGATAATTTCTTGAGGGGCATGGATGATGGTCTTAATGACCTTATGGAAGGTAAGCCATCTCCATTTGATTCTGATGAAGAACATGCCCCGGA TGCTGAAGCTTACCATTCTGAGAGCGCTGAGGATGATGACCCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGGC CCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATTCTGAGAGCGCTGAGGATGATGGCCCTTCTAATACTGGAAGTGAGGATGAGATGTCCCATCCTC AGAGCACTGAGGATGACGACCCTTCTAATACTGGAAGTGAGGATGAGTCATCCTCTGCAGAATTTACAGAAGAAATGCAGTCTGAAGACGTTGCAGGAGC TTATGATCTCTCAGAAAAACTTGACGATGAGATTGAATGTGAAGAAGTCAGCAAGATATCTTCACGGAAGAAGCGCCGCAGGAGAAAGAAATCTAAACTG AACCAAGATGATTTGGCTAGTAATGCAGTAGATAGTCATACTGCTGAGCAATCACTTGATGTAGATGTTAAAGTGGACAAACATCCTGTTGAAGTCTTGG CACCTCCTGTTGGTGTAAAATACATTGCTCCTCATTTGAGATCTCAGGCGGGAGATGACTCTGAAAATGTTACGCAAACTCGAAGACGAGTTCGCGGTTT ACTGAATAGGTTATCTGAATCCAATATAGAATCCGTTACTGGGGAAATGACTTCCATATTTCGATCTCTTAGTCGAAGCGTTAGTACTCAAATTATCAGT GATGAGGTGTTGACAGCTTGCTCTGGTGGGCCCCGTGGAAATGAACAGTATGCTGCTGTTTTTGCAGCTTTTGTTGCAGGCATGGGTTGTTCTGCTGGAA TGGACTTCAGCGCAAAACTCATGGCTGCACTTGCTAAAGCTTTTGAGGATGAGTACCGTAAAGAAGACAATCTATCTTTGAGAAACCTCACTCTCTTGCT GTCCTATTTATACATATTTGGAGTTTGTTCAAGTGATTTGATATATGACTTTTTGATGATGTTGAGCAAGCGGCTGACAGAAGTTGATGTTTCCACGATC TTGACTGTCTTACAGTGCTGTGGGATGAAATTAAGAGGCGATGATCCTACTGTCATGAAAAATTTCATTCAGAGTGTTCAGAATAGGGTGAATGAGCTAA AGGCTTCCTCCAGTGAAGAGGAGGGAAAAATCAATAGCAGAAGAATGGAGTTCATGCTTGAAACGATATGTGACATAAAAAACAATAAGAAGAGGCCTAC TGGAGAAACTTCGCTACACACTCGGATTAAGAATTGGCTAAAGAAGTTGGGGGTCGAAAACATTCTGCTTAGAGGACTTAAATGGAGCAAGCTGCTTGAT CCTCACAAGAAGGGTTTGTGGTGGTCGTCTGGTGATCTGGCTACTACAGCAGGTGATTTCGAAGAAGTTGCTAATACAATTGACAAGGAGGTGTTGGAGG CTCAAAAGATGCTGCAGCTTGCTGCTTCTCAAAGGATGAATACAGATACAAGGAAGGCAATATTCTGTATCATAATGAGCGGAGAGGACTACATCGATGC CTTTGAGAAGCTTCTCAGGCTAAATTTAAAGGGAGAGCAGGACAGGGAGATTATGCGGGTCCTTGTAGCGTGCTGTTTACAGGAGAAAGTCTTTAACAAG TACTACACTGTTCTGGCTTCCAAATTGTGTAAACATGAAAAGAACCACAAGTACACATTACAGTATTGCATTAGGGACCACTTCAAAGAGTTGGACTCGA TGCCACTTGCAAGATCGATGCACCTAGCGAAGTTTGTGGCGGAGATGGTTGTTAACTTTTCGCTCTCCCTTTCCGTCGTGAAGACTATCGACTTTGATGA TACGGCGCAGCTAACCGCCAAGAGGATCAAACACTTCCAGATGTTTTTCGAGGCCATTTTCGAGTATCCCGATAAAATTGTCTGGAACACATTCACTCGC CTGGCGATCGACCCGGAGCTGGAATCGGTCCGGCATGGGATGGAGTTCTTTATCAGGGAGTACGTTGTGAAATCTGACAAGGCCGGGGCTCGCAAGTTCA AAGTTGCAAAGAAAGCTCTTGCCAATATGGAAGGAGTCCTGATGTGA
AA sequence Show only first row Show all	>Lus10014048 pacid=23156815 polypeptide=Lus10014048 locus=Lus10014048.g ID=Lus10014048.BGIv1.0 annot-version=v1.0 MVGESRREKRKEARQDAKQRRNDSWLAHQQSKAEKIKAKSAKSKRKNVDKSNTSVAQSRQLDAQLQGERDSDRTTTQAIMKAPLVPQRTVKEKQSLKRKP QTGFEEFLSMDMQQDEISAQYDLEVEKRLAKKLKVKDNFLRGMDDGLNDLMEGKPSPFDSDEEHAPDAEAYHSESAEDDDPSNTGSEDEMSHSESAEDDG PSNTGSEDEMSHSESAEDDGPSNTGSEDEMSHPQSTEDDDPSNTGSEDESSSAEFTEEMQSEDVAGAYDLSEKLDDEIECEEVSKISSRKKRRRRKKSKL NQDDLASNAVDSHTAEQSLDVDVKVDKHPVEVLAPPVGVKYIAPHLRSQAGDDSENVTQTRRRVRGLLNRLSESNIESVTGEMTSIFRSLSRSVSTQIIS DEVLTACSGGPRGNEQYAAVFAAFVAGMGCSAGMDFSAKLMAALAKAFEDEYRKEDNLSLRNLTLLLSYLYIFGVCSSDLIYDFLMMLSKRLTEVDVSTI LTVLQCCGMKLRGDDPTVMKNFIQSVQNRVNELKASSSEEEGKINSRRMEFMLETICDIKNNKKRPTGETSLHTRIKNWLKKLGVENILLRGLKWSKLLD PHKKGLWWSSGDLATTAGDFEEVANTIDKEVLEAQKMLQLAASQRMNTDTRKAIFCIIMSGEDYIDAFEKLLRLNLKGEQDREIMRVLVACCLQEKVFNK YYTVLASKLCKHEKNHKYTLQYCIRDHFKELDSMPLARSMHLAKFVAEMVVNFSLSLSVVKTIDFDDTAQLTAKRIKHFQMFFEAIFEYPDKIVWNTFTR LAIDPELESVRHGMEFFIREYVVKSDKAGARKFKVAKKALANMEGVLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17930			MIF4G domain-containing protei...		Lus10014048 [exp]	0	1
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	2.2	0.9127
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	2.4	0.9004
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	2.8	0.9019
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	7.5	0.8453
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	7.7	0.8846
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	8.9	0.8917
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	8.9	0.8633
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	11.0	0.8033
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	11.6	0.8617
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	11.7	0.8465

Compare expression of checked genes

Lus10014048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.