Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15680 228 / 6e-77 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT5G37770 124 / 2e-36 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 124 / 6e-36 EF hand calcium-binding protein family (.1) AT1G66400 119 / 2e-34 CML23 calmodulin like 23 (.1) AT1G18210 116 / 3e-33 Calcium-binding EF-hand family protein (.1.2) AT1G73630 110 / 5e-31 EF hand calcium-binding protein family (.1) AT5G17470 104 / 8e-29 EF hand calcium-binding protein family (.1) AT2G36180 103 / 3e-28 EF hand calcium-binding protein family (.1) AT3G10190 104 / 6e-28 Calcium-binding EF-hand family protein (.1) AT5G42380 103 / 8e-28 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019863 [exp] 347 / 1e-123 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 125 / 6e-37 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10018012 [exp] 126 / 7e-37 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 124 / 2e-36 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10031345 [exp] 119 / 5e-34 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 119 / 5e-34 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 114 / 4e-31 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10024574 [exp] 103 / 2e-28 AT1G24620 143 / 4e-44 EF hand calcium-binding protein family (.1) Lus10009564 [exp] 100 / 1e-26 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102500 [exp] 253 / 6e-87 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.007G042900 [exp] 185 / 1e-59 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.010G107100 [exp] 133 / 2e-39 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G039500 [exp] 130 / 2e-38 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.008G134300 [exp] 128 / 2e-37 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G126200 [exp] 127 / 2e-37 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 125 / 9e-37 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.012G048200 [exp] 118 / 9e-34 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.014G070700 [exp] 113 / 2e-31 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.005G215700 [exp] 102 / 8e-28 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10014050 pacid=23156762 polypeptide=Lus10014050 locus=Lus10014050.g ID=Lus10014050.BGIv1.0 annot-version=v1.0 ATGTCAAACGTTAGCTTTCTGGAGTTCCAGTACAAGCTTTCCAGGAACAAGTTCCTGCGGAAGCCAACTCGAATTTTATCGTCTCGCAGCACCAGCAGCC GGCAGAACTCTGCCTTACCAACTACTGTGTTGCAGCCGAGTCTGGCGGAGATGAGGCAAGTTTTCAACAAATTCGATTCGAATGGAGACGGTAAAATCTC TCGACACGAGTACAAGGCGATCCTGAGGGCTCTAGGACAGCAGTCCATGGTAGCAGATGTGCAGCATATTTTCAAGGTGGCTGACTTGGACGGAGACGGG TTCATAGATTTTAAGGAGTTTGTCGAAGCGCAGAGGAAAGAAGGAGCTGGGGTTAGGACGATGGATATACAAAGCGCTTTCAGGACGTTTGATGTGAACG GAGATGGAAGGATAAGTGCGGAGGAGTTACTGCAGGTTCTTCGACAGCTCGGAGAGCGCTGCACCCTTGATGATTGCCGGAGAATGGTTAGAGCGGTGGA CAACGACGGGGATGGGTTGGTTAACATGGACGAGTTCACGACCATGATGACTCGAACTCTCGTGCACAATTAA
AA sequence Show only first row Show all	>Lus10014050 pacid=23156762 polypeptide=Lus10014050 locus=Lus10014050.g ID=Lus10014050.BGIv1.0 annot-version=v1.0 MSNVSFLEFQYKLSRNKFLRKPTRILSSRSTSSRQNSALPTTVLQPSLAEMRQVFNKFDSNGDGKISRHEYKAILRALGQQSMVADVQHIFKVADLDGDG FIDFKEFVEAQRKEGAGVRTMDIQSAFRTFDVNGDGRISAEELLQVLRQLGERCTLDDCRRMVRAVDNDGDGLVNMDEFTTMMTRTLVHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	0	1
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	1.4	0.9576
					Lus10025141 [exp]	2.4	0.9480
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	2.4	0.9546
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10019863 [exp]	3.5	0.9249
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	3.5	0.9479
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	5.0	0.9391
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	7.2	0.9145
					Lus10003556 [exp]	7.3	0.9381
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	8.7	0.9186
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	8.8	0.9239

Compare expression of checked genes

Lus10014050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.