Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19220 159 / 3e-49 CYO1 ,SCO2 SNOWY COTYLEDON 2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, protein disulfide isomerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019862 [exp] 261 / 3e-89 AT3G19220 203 / 9e-67 SNOWY COTYLEDON 2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, protein disulfide isomerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102400 [exp] 185 / 2e-59 AT3G19220 193 / 4e-63 SNOWY COTYLEDON 2, SHI-YO-U MEANS COTYLEDON IN JAPANESE, protein disulfide isomerases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014051 pacid=23156776 polypeptide=Lus10014051 locus=Lus10014051.g ID=Lus10014051.BGIv1.0 annot-version=v1.0 ATGAATCTGGCAATGCTCCCCTTGAACCCCAGCTCCCTCTTCTTCCCTTCAAAACCTACTCCTTCAATTCCCTTATCCCCATCTACTACTTCTTCTTCGT CTTCTTTTCGATGTTTGGCAGTCGGAGGAGATGTTCCGGCGAGGCCCGAGCTCCCGCGGTGGTTCCCCTTCTCTGCAGCTGACGCTGTAGCCGGCGGAAT ACGGCTCGGCAATGACTCCGACGGAGGGGGGAGAGCCGGTTCCAGCTCAGTCGGCGGGGGAAGTAGCAACGGCAGTGGGAGATTGAATGCGAGGGAGAAG AAATGGTCTCGGAATAGAGAGAGCTACTTGATGGACGATCAAGACGTGCTTCCTCTCCCCATGACTTATCCAGATTCTAAACCCGTATCTCCTGACGTCA TCGACAAGCGGCTGAGATGTGATCCTGAAATTGAGGATTGTAGGGAAGTGGTGTATGAATGGACTGGGAAGTGCAGAAGCTGCCAAGGGTCGGGACTGGT TAGCTATTACAACAAAAGAGGGAAGGAGACCATCTGCAAATGCGTGCCTTGCCAAGGGATTGGTATGTTCTTCTCTTTATGTTGCAGTGCTACAGCATTA AATCGAGTATTGGATAGACGTTGTACTCACGAATGA
AA sequence Show only first row Show all	>Lus10014051 pacid=23156776 polypeptide=Lus10014051 locus=Lus10014051.g ID=Lus10014051.BGIv1.0 annot-version=v1.0 MNLAMLPLNPSSLFFPSKPTPSIPLSPSTTSSSSSFRCLAVGGDVPARPELPRWFPFSAADAVAGGIRLGNDSDGGGRAGSSSVGGGSSNGSGRLNAREK KWSRNRESYLMDDQDVLPLPMTYPDSKPVSPDVIDKRLRCDPEIEDCREVVYEWTGKCRSCQGSGLVSYYNKRGKETICKCVPCQGIGMFFSLCCSATAL NRVLDRRCTHE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Lus10014051 [exp]	0	1
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	5.8	0.8821
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	5.8	0.8765
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	10.7	0.8724
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	11.2	0.8574
AT3G23760			unknown protein		Lus10043212 [exp]	19.0	0.8615
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10034166 [exp]	19.7	0.8448
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	25.1	0.8642
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	27.5	0.8150
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	28.7	0.8571
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	29.5	0.8621

Compare expression of checked genes

Lus10014051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.