Plant FIBer expression Database

Lus10014052 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34412 260 / 5e-90 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019861
[exp]
338 / 5e-121 AT4G34412 262 / 5e-91 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G141400
[exp]
289 / 1e-101 AT4G34412 265 / 8e-92 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08617 CGI-121 Kinase binding protein CGI-121
Representative CDS sequence
>Lus10014052 pacid=23156866 polypeptide=Lus10014052 locus=Lus10014052.g ID=Lus10014052.BGIv1.0 annot-version=v1.0
ATGAAGGAATTCCAAATCGACGGGAAGAACACTCTTTCTCTCGCCCTCTTCACTGAAGTCACCAATTCCAGGGAACTTCTTGACTCTATGCAAGCTGGGA
ATCTGGAGTTGGAAGTAGCCTTTATGAACGCATCACTTGTCCCAGATGTCTTCCCTGTTCTCGCCGCAGCACACAAGGCTCTAGTCACAAAGTCTCGAGA
TTCATTGACAACCCGAACGCTTCATTCTGAGCTTGTTTACAATTATTCTGGATCCAAGCATATTACAGAGTCCCTAAAAAGATGTGGCATCTCAGACAGC
TCCACATATGTCCTCGCAGCTCGCTTTAATGCATCACCAGAAGATATGAAAACGGTCGAGAAACTTATCAACGGTGAGGAAGTCGAGTTAGACGAGCTGG
AACGCCGATCTAATCTAGCTCAAATCCTTAAGCACTACAAGATTTCCACAGCAGAGTTGGGGATTTCGTCGCTTGCTAATGCAATAACTTGCCGGATTGC
TTCCCGGGATGCATTGTGA
AA sequence
>Lus10014052 pacid=23156866 polypeptide=Lus10014052 locus=Lus10014052.g ID=Lus10014052.BGIv1.0 annot-version=v1.0
MKEFQIDGKNTLSLALFTEVTNSRELLDSMQAGNLELEVAFMNASLVPDVFPVLAAAHKALVTKSRDSLTTRTLHSELVYNYSGSKHITESLKRCGISDS
STYVLAARFNASPEDMKTVEKLINGEEVELDELERRSNLAQILKHYKISTAELGISSLANAITCRIASRDAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34412 unknown protein Lus10014052
[exp]
0 1
AT2G37020 Translin family protein (.1.2) Lus10020710
[exp]
4.9 0.9057
AT4G35050 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10005074
[exp]
8.7 0.8953
AT4G24710 P-loop containing nucleoside t... Lus10043321
[exp]
12.8 0.8913
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Lus10040712
[exp]
16.3 0.8922
AT1G19990 unknown protein Lus10033141
[exp]
17.5 0.8831
AT2G40690 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESAT... Lus10029028
[exp]
17.7 0.8259
AT1G50660 unknown protein Lus10021521
[exp]
17.9 0.8841
AT3G04680 CLPS3 CLP-similar protein 3 (.1.2) Lus10015355
[exp]
21.7 0.8397
AT1G78560 Sodium Bile acid symporter fam... Lus10013700
[exp]
21.9 0.8717
AT2G36400 GRF ATGRF3 growth-regulating factor 3 (.1... Lus10023877
[exp]
27.6 0.8738

Lus10014052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.