Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19240 866 / 0 Vacuolar import/degradation, Vid27-related protein (.1) AT4G33400 768 / 0 Vacuolar import/degradation, Vid27-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019860 [exp] 1161 / 0 AT3G19240 908 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10042656 [exp] 808 / 0 AT4G33400 903 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Lus10021729 [exp] 805 / 0 AT4G33400 905 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G102000 [exp] 937 / 0 AT3G19240 877 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.004G141300 [exp] 914 / 0 AT3G19240 893 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.014G029600 [exp] 812 / 0 AT4G33400 894 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1) Potri.002G126500 [exp] 807 / 0 AT4G33400 914 / 0.0 Vacuolar import/degradation, Vid27-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08553 [flax] [poplar] VID27 VID27 C-terminal WD40-like domain
Representative CDS sequence Show only first row Show all	>Lus10014053 pacid=23156820 polypeptide=Lus10014053 locus=Lus10014053.g ID=Lus10014053.BGIv1.0 annot-version=v1.0 ATGGGTACTTCTCAGAGCCGTGAGGGCGAAGAGCTCTCGGATTCCGACGACTACCTCTCCGAAACAGAGGATTACGACGAGGAAGATGAAGAAGAAGAGT TTCACTACGATGCTGTTGAGCGACAAGAGACGCCTCAGACGACTTCCTCTCACTGGAAGATCGACGAGATCGACATGAAGCTGAAATCCTTGAAGCTCAA ATACGGCGAATCCGCGCAGGGAGTAACCGGCAACCGTCGCGTCAAGCTTTACCTACACATCGGAGGAAACTCTCCCAAGGCGAAGTGGATCGTGTCGGAG AAGACGGCGTCGTACAGCTTCGTATTGAAGGATCCTTCTGATCGCGAGGACGAAGGAGGTTCTTCCGACAGTGGAGGTAATTCTTTATGGTTTCTGGTTG TCGGGACTAAAGTTAATGCTAGGGTTTCGACGGAGATGCAATTGAAGATTTTTGCGGATCAGAGGAGGGTTGATTTCGTGGATAGTGGCGTTTGGGCGTT GAAGTTCCCCACCGATGAGGAGTATAGGAGGTTTGTGGAGGAGTATCAGGATTGCTTGTTTGAAAATGTTTACGGGGTTAAGGCCACGGATCAGAATAAG GTGAAGGTGTATGGAAAGGATTTTCTAGGGTGGGCTAAGCCGGAAATGGCCGACGATTCGATGTGGGAGGATGCGGATGATGGAGAAGAGAAGTATACTC CTGTTAGAGGGAACCAGGACTTGATGGAGGAATTCGAGGAGGCTGCGAATGGTGGGGTTCATAGCTTGACTTTAGGTGCCATGGAGAATAGTTTCCTGGT GAATGATTTGGGCGTTCAGGTTTATAGGAACTATGAGAAGGGTATCCATGGTAAAGGGATTTGTGTGAATTTTGATCAAGGGGGTAGTGGATCTAGTTTG GCGAGATCTACACCGAAGAAAGGGATGCTCATGAGAGCGGAGACGAATATGATGCTGATGAGCCCGATGAAGGAAGGGAAGCCACACTCTACAGGGATTA AACAGCTTGACATTGAGTCGGGGAAGATTGTGACGGAGTGGAAATTTGAGAAAGATGGGACGGAAATTACGATGAGGGATATTATAAATGATAACAAAGG GTCTCAGTTGGATCCTTCTGAGAGCACGTTCTTGGGGTTGGATGATAATAGGCTGTGTCAATGGGACATGAGAGATAAGAGAGGCATCGTTCAGGATATT GCCTCGCCTGTTCTGCAATGGAGTGATGGGCATCAATTCTCGAGAGGGACAAATTTTCAGTGTTTTGCAAGTACTGGTGATGGGTCCATTGTCGTTGGAT CGCTCGATGGGAAGATCAGGCTATATTCTAGGAGATCAATGAGACAGGCTAAGACCGCTTTCCCGGGGCTTGGTTCACCCATCACTCATGTGGATGTTAC ATATGATGGAAAGTGGGTTTTGGGGACTACTGATACTTACTTGATCCTCATCTGCACTCTGTTTACGGACAAGGATGGTAAGACTAAGACTGGATTTGGT GGTCGTATGGGGAATAAAATACCAGCTCCGAGAATGCTCAAGTTGATTCCTTTGGATTCGCATTTGGCTGGTGGCAATAACAAGTTTCACGGCGGCCATT TCTCATGGGTCACGGAGAACGGTAGACAAGAGCGCCACATCGTGGCAACGGTGGGGAAGTTCAGTGTGATATGGGACTTCCATCAGGTGAAGAACACTGC ACATGGATGCTACAAGAACCAGCAAGGCCTGAAGAGCTGCTACTGCTACAAGATTGTGCTGAAGGACGAGTCAATCGTGGAAAGCCGGTTCATGCACGAC AACTACGCCTCTACCAACTCTCCGGAAGCTCCTTTAGTCGTGGCGACGCCGATGAAAGTCAGCTCCTTCAGCCTCTCCGGGAAGCGTGGTTGA
AA sequence Show only first row Show all	>Lus10014053 pacid=23156820 polypeptide=Lus10014053 locus=Lus10014053.g ID=Lus10014053.BGIv1.0 annot-version=v1.0 MGTSQSREGEELSDSDDYLSETEDYDEEDEEEEFHYDAVERQETPQTTSSHWKIDEIDMKLKSLKLKYGESAQGVTGNRRVKLYLHIGGNSPKAKWIVSE KTASYSFVLKDPSDREDEGGSSDSGGNSLWFLVVGTKVNARVSTEMQLKIFADQRRVDFVDSGVWALKFPTDEEYRRFVEEYQDCLFENVYGVKATDQNK VKVYGKDFLGWAKPEMADDSMWEDADDGEEKYTPVRGNQDLMEEFEEAANGGVHSLTLGAMENSFLVNDLGVQVYRNYEKGIHGKGICVNFDQGGSGSSL ARSTPKKGMLMRAETNMMLMSPMKEGKPHSTGIKQLDIESGKIVTEWKFEKDGTEITMRDIINDNKGSQLDPSESTFLGLDDNRLCQWDMRDKRGIVQDI ASPVLQWSDGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSRRSMRQAKTAFPGLGSPITHVDVTYDGKWVLGTTDTYLILICTLFTDKDGKTKTGFG GRMGNKIPAPRMLKLIPLDSHLAGGNNKFHGGHFSWVTENGRQERHIVATVGKFSVIWDFHQVKNTAHGCYKNQQGLKSCYCYKIVLKDESIVESRFMHD NYASTNSPEAPLVVATPMKVSSFSLSGKRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19240			Vacuolar import/degradation, V...		Lus10014053 [exp]	0	1
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	3.5	0.8101
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	3.6	0.8175
					Lus10012576 [exp]	6.3	0.7997
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	6.7	0.7807
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	9.2	0.8029
AT2G37035			unknown protein		Lus10026520 [exp]	11.5	0.7793
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	13.3	0.8017
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	18.5	0.7669
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	21.5	0.7748
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	28.2	0.7904

Compare expression of checked genes

Lus10014053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.