Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19260 312 / 7e-107 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) AT1G13580 215 / 2e-68 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 206 / 4e-65 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 187 / 9e-58 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019859 [exp] 503 / 0 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10029096 [exp] 211 / 1e-66 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013063 [exp] 208 / 6e-66 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 209 / 7e-66 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030571 [exp] 208 / 1e-65 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013494 [exp] 188 / 7e-58 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10007964 [exp] 176 / 2e-53 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G141000 [exp] 333 / 2e-115 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.009G101800 [exp] 332 / 8e-115 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.015G055000 [exp] 211 / 3e-67 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.010G134700 [exp] 205 / 8e-65 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 205 / 1e-64 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10014055 pacid=23156799 polypeptide=Lus10014055 locus=Lus10014055.g ID=Lus10014055.BGIv1.0 annot-version=v1.0 ATGGATGCCGTCGGGATCTGGAGCCGCGATATCGGTTCGCCGCTTGTTTCTTTGGCTGCTGGTTTGAGTATTTGGTTGTTGGGAAAGAGAGCTGCTTCAC CGAAGATAGATGAAGTAACAAAAGCTACAATTGTTAAATGTTCCGAGTCTATGTGGAAGCTAACATACTATGCCGCTCTTGAAGTTTATATTCTGAAAAT TCTGTATGAAGAGCCATGGTTCTGGGATACAAAACTTTACTTCAAAGGCTTGCCGAATCAAGAATTGAAGCTTTCTATTATGCTATATTACATGTGCGAA TGTGGATTCTACCTTTACAGTATCCCTGCTCTGGTATTGTGGGAAACGAGAAGAAAAGATTTTGCTGTGATGATGTCGCATCATGTAATTACAGTTGCAT TGATTGGAATCTCCTACGTTACAAGCTTTTTCCGTATAGGAACAATCATCCTTGCCCTCCATGATGCAAGTGATGTATTCTTAGAAGCTGCGAAAATTTG CAACAAAACTCGGAGGGAAGTTGGAGCAAGCATTTTCTTCGGCTTATTTGCTGCGTCGTGGCTCATTCTGCGATTAATATTCTTTCCGTTTTGGGTGATA CATAGTACAAGCCATGACCTTGTTGAGTACTTGGATTTAAGACGGTTGTACCCGAGATCACTGTACTATGGGTTCAACACAATGCTGTTCACTTTGCTTA TATTCCACATCTACTGGTGGATTCTGATATGGGCAATGATAAAAAGGCAACTACTAAACAGTGGAAAGGTCGAAGGAGATATAAGATCTGGTAGTAGCGA GCGGAGAGTGACCAAAAATAGGAGGAGGACAAGCAGATTGGAAGGCATTAGGTTTGAATTTTGA
AA sequence Show only first row Show all	>Lus10014055 pacid=23156799 polypeptide=Lus10014055 locus=Lus10014055.g ID=Lus10014055.BGIv1.0 annot-version=v1.0 MDAVGIWSRDIGSPLVSLAAGLSIWLLGKRAASPKIDEVTKATIVKCSESMWKLTYYAALEVYILKILYEEPWFWDTKLYFKGLPNQELKLSIMLYYMCE CGFYLYSIPALVLWETRRKDFAVMMSHHVITVALIGISYVTSFFRIGTIILALHDASDVFLEAAKICNKTRREVGASIFFGLFAASWLILRLIFFPFWVI HSTSHDLVEYLDLRRLYPRSLYYGFNTMLFTLLIFHIYWWILIWAMIKRQLLNSGKVEGDIRSGSSERRVTKNRRRTSRLEGIRFEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10014055 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	5.7	0.7839
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024772 [exp]	5.7	0.7095
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	8.5	0.7467
AT3G45330			Concanavalin A-like lectin pro...		Lus10003574 [exp]	14.8	0.6305
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	26.9	0.7165
AT3G10350			P-loop containing nucleoside t...		Lus10037982 [exp]	39.0	0.7062
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	39.8	0.7011
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10034152 [exp]	39.8	0.6952
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	39.9	0.7114
AT3G27050			unknown protein		Lus10035208 [exp]	52.9	0.6973

Compare expression of checked genes

Lus10014055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.