Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15460 400 / 7e-141 Ribosomal RNA processing Brix domain protein (.1) AT1G52930 392 / 1e-137 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019857 [exp] 548 / 0 AT3G15460 444 / 4e-158 Ribosomal RNA processing Brix domain protein (.1) Lus10002403 [exp] 431 / 5e-153 AT3G15460 519 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10027900 [exp] 430 / 1e-152 AT3G15460 512 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122200 [exp] 400 / 6e-141 AT3G15460 517 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Potri.001G403100 [exp] 399 / 2e-140 AT3G15460 514 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10014058 pacid=23156798 polypeptide=Lus10014058 locus=Lus10014058.g ID=Lus10014058.BGIv1.0 annot-version=v1.0 ATGGCAAAGAAACGAAAGCATAGCGAGACGGACGCCGCTGCGGCGGAGACACCTCAAAATAAAGAGGAGGCTTCGCAGGAGGCTGCAGGTGTAGGTGAGG ACGAAGAGGATGAAGCTCAGCATCATCATCCTCGGACTTTCAGGAATAAAGAGAAAGTCTTGGTCACTTGCTCCCGCCGAATCAATTTCAGGTATCGACA CTTGATGTTGAATGTGGTTTCCCTGCTGCCTCATTGTAAGAAAGATAGCAAGATCGAATTGAAAAGCGATAAAGGGGTGGGGCTTAGTGAGATGGTTGAG CTTAATAGCTGCTCTTCCTGTCTATTCTTCGAGAGCAAGAAGAAGAAAGATTTGTATTTGTGGATGGCAAAGTGTCCTAGTGGCCCATCTGTGAAGTTCC TAGTTAATGCTGTGCATACGACGGAGGAGCTGAAGTTCAATGGGAGTAATCTATTGGGAAAGCGACCGCTTTTGACATTCTCATCGAATTTTGATCAAGA TGCTCATTGGAAGCTTTTGAAGGAAATGATAACTCAGATATTTGGAACTCCGAAAGACCTCAGGAAATCTAAGCCATATCACGATCATGTCTTTGTTTTC TCCATTGTCGATGATCATATATGGTTCCGCAATTACCAGATATCACCTCCTCACGACAAATCTGATGAAGTTATTGACATAGGCCTGGAGAAGATGACCC TTATCGAGGTTGGTCCAAGATTCTGTATGAACCCTATCAAGATATTCAGCGGCAGTTTTGGAGGTCCGACTCTCTATGAGAATCCATTCTACGTATCTCG TAACAAGGTAGGGGCAACGGAGAAGCGGAAGGGTGCTGGGAAGTACGCGAAGAAAGTGAAAGCCAAGACGAGAATGAAGGTGCACGAGCTCACGAAACAG TTGGAGACTAACGTGTTTTCCGAGGCGTGGAAGGACGAGTGA
AA sequence Show only first row Show all	>Lus10014058 pacid=23156798 polypeptide=Lus10014058 locus=Lus10014058.g ID=Lus10014058.BGIv1.0 annot-version=v1.0 MAKKRKHSETDAAAAETPQNKEEASQEAAGVGEDEEDEAQHHHPRTFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDSKIELKSDKGVGLSEMVE LNSCSSCLFFESKKKKDLYLWMAKCPSGPSVKFLVNAVHTTEELKFNGSNLLGKRPLLTFSSNFDQDAHWKLLKEMITQIFGTPKDLRKSKPYHDHVFVF SIVDDHIWFRNYQISPPHDKSDEVIDIGLEKMTLIEVGPRFCMNPIKIFSGSFGGPTLYENPFYVSRNKVGATEKRKGAGKYAKKVKAKTRMKVHELTKQ LETNVFSEAWKDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15460			Ribosomal RNA processing Brix ...		Lus10014058 [exp]	0	1
AT3G52040			unknown protein		Lus10039586 [exp]	11.7	0.7674
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	15.7	0.7642
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	19.4	0.6977
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	23.3	0.7499
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10004763 [exp]	26.8	0.7358
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	27.1	0.7387
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	30.1	0.6552
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	33.6	0.7305
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	36.5	0.7248
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	38.2	0.7262

Compare expression of checked genes

Lus10014058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.