Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15620 922 / 0 ATHNIR, NIR1 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) AT5G04590 97 / 9e-21 SIR sulfite reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019856 [exp] 621 / 0 AT2G15620 583 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Lus10027360 [exp] 93 / 2e-19 AT5G04590 985 / 0.0 sulfite reductase (.1) Lus10030131 [exp] 88 / 8e-18 AT5G04590 1017 / 0.0 sulfite reductase (.1) Lus10009951 [exp] 87 / 2e-17 AT5G04590 1020 / 0.0 sulfite reductase (.1) Lus10014907 [exp] 51 / 2e-06 AT5G19450 896 / 0.0 calcium-dependent protein kinase 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140800 [exp] 971 / 0 AT2G15620 1021 / 0.0 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Potri.009G101600 [exp] 444 / 7e-154 AT2G15620 430 / 2e-148 ARABIDOPSIS THALIANA NITRITE REDUCTASE, nitrite reductase 1 (.1) Potri.001G257000 [exp] 100 / 7e-22 AT5G04590 1054 / 0.0 sulfite reductase (.1) Potri.009G052600 [exp] 99 / 2e-21 AT5G04590 1007 / 0.0 sulfite reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03460 [flax] [poplar] NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain PF01077 [flax] [poplar] NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
Representative CDS sequence Show only first row Show all	>Lus10014059 pacid=23156821 polypeptide=Lus10014059 locus=Lus10014059.g ID=Lus10014059.BGIv1.0 annot-version=v1.0 ATGTCTTCTTTTTCAGCCAAGTTCATCGCCCCACCTTTCCCCTCCATTTCTTCCGCCGCCAGGAGCAGCAGACCATCCAAGCTATTCGCTGCCACAACTC CGGCGGCTCCGGCCGCAGTTGAAGCTGTTCCGGATGCAGAGAGATTGGAGCCGCGGGTGGAAGAGAGAGCAGGGTACTGGGTGTTGAAGGAGAAGTTCAG ACAAGGAATCAACCCACAAGAGAAGGTCAAATTGGGCAAAGAACCCATGACTCTTTTCACTGAGAACGGTATTGACGACCTCGCTAAGCTCTCCATGGAA CAGATCGACGCCGATAAGCTCAGTAAAGAGGACATCGACGTCCGCCTCAAGTGGCTCGGCCTCTTCCACCGCAGGAAGCATCAGTATGGAAGGTTTATGA TGAGATTGAAGCTGCCAAATGGGGTAACGACCAGCGAACAAACGAGATACTTAGCGAGCGTCATTAGGAAGTACGGCAAAGAAGGATGCGCCGACGTTAC TACCCGACAGAACTGGCAGATTCGAGGGGTTGTGCTACCAGATGTGCCGGAGATACTTAAAGGACTCGCCGGAGTTGGATTGACGAGCTTGCAGAGTGGG ATGGACAATGTGAGGAACCCCGTTGGGAATCCGATCGCCGGAATCGACCCTGATGAGATCGTTGACACCAGGCCTTACACCAACTTGCTGTCCCAGTTCA TCACTGCCAATTCCGCTGGCAACACTGCCCTTACCAATTTGCCAAGGAAATGGAATGTTTGTGTTGTGGGTTCACATGACCTATATGAGCATCCTCACAT CAACGATCTAGCATATATGCCGGCTACCAAGGATGGGAGGTTTGGGTTCAACATGTTGGTTGGTGGGTTCTTTAGTCCCAAGAGGTGCGAAGAGGCGATT CCTCTTGATGCTTGGGTGGCGGCCGAGGATGTCATTCCTTCGTGTAAAGCGGTCTTGGAAGCGTTCAGGGATCTCGGGTTTAGAGGAAACCGACAAAAGA CTAGGATGATGTGGCTCATTGACGAACTCGGGATTGAAGGATTTAGGGCTGAGGTGGCGAAAAGAATGCCAAATCAAGAGCTAGAGCGAGCAGCCTCGGA GGAGCTCGTCCAGAAGAAACGGGAAAGGAGGGACTTGTTCGGGGTCCATCCGCAAAAGCAAGAAGGTTTAAGCTACGTCGGACTTCATATTCCCGTGGGT AGAGTCCAAGCCGACGAAATGGACACTCTTGCTCGCCTAGCTGACGAATACGGCACCGGGGAGCTCCGCCTCACGGTGGAACAAAACATCATCATCCCGA ACGTCGACAACTCCAAGATCGAATCTTTACTAAAAGAACCCCTACTAGAGAGGTTTTCCCCGGAGCCACCGATTCTCATGAAAGGTCTGGTCTCGTGCAC CGGGAGCCAGTTCTGCGGGCAAGGAATCATCGAGACGAAGGCGAGGGCAATGAAGGTGACAGAAGAGTTGCAACGCATCGTGTCAGTAGACCGCCCGGTG AGGATGCACTGGACGGGGTGCCCTAACACATGCGGGCAAGTTCAAGTGGCCGACATAGGATTCATGGGGTGCATGGCTAGGGACGAGAACGGGAAGCCCT GTGAGGGAGTGGATGTTTTCTTGGGTGGCAAGATCGGGAGTGATTCCCACTTGGGGGAGATTTACAAGAAGAGCGTGCCTTGCAAGGATTTGGTGCCAGT GGTCGTTGACATCTTGGTTGAGAAATTTGGAGGCGTTGTAAGGGAGAGGGAGGACGTTGAAGAGTAG
AA sequence Show only first row Show all	>Lus10014059 pacid=23156821 polypeptide=Lus10014059 locus=Lus10014059.g ID=Lus10014059.BGIv1.0 annot-version=v1.0 MSSFSAKFIAPPFPSISSAARSSRPSKLFAATTPAAPAAVEAVPDAERLEPRVEERAGYWVLKEKFRQGINPQEKVKLGKEPMTLFTENGIDDLAKLSME QIDADKLSKEDIDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSEQTRYLASVIRKYGKEGCADVTTRQNWQIRGVVLPDVPEILKGLAGVGLTSLQSG MDNVRNPVGNPIAGIDPDEIVDTRPYTNLLSQFITANSAGNTALTNLPRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNMLVGGFFSPKRCEEAI PLDAWVAAEDVIPSCKAVLEAFRDLGFRGNRQKTRMMWLIDELGIEGFRAEVAKRMPNQELERAASEELVQKKRERRDLFGVHPQKQEGLSYVGLHIPVG RVQADEMDTLARLADEYGTGELRLTVEQNIIIPNVDNSKIESLLKEPLLERFSPEPPILMKGLVSCTGSQFCGQGIIETKARAMKVTEELQRIVSVDRPV RMHWTGCPNTCGQVQVADIGFMGCMARDENGKPCEGVDVFLGGKIGSDSHLGEIYKKSVPCKDLVPVVVDILVEKFGGVVREREDVEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	0	1
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	1.0	0.8968
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	1.4	0.8470
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	1.7	0.8338
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	8.7	0.7802
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	9.5	0.7595
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10035439 [exp]	11.6	0.7489
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	13.7	0.7361
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	15.2	0.7645
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	25.4	0.7203
AT1G23880			NHL domain-containing protein ...		Lus10030850 [exp]	25.7	0.7211

Compare expression of checked genes

Lus10014059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.