Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49710 637 / 0 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1) AT3G19280 635 / 0 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G71990 63 / 2e-10 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019855 [exp] 997 / 0 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1) Lus10002401 [exp] 756 / 0 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1) Lus10027899 [exp] 709 / 0 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10009440 [exp] 65 / 5e-11 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10006076 [exp] 62 / 3e-10 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101500 [exp] 733 / 0 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1) Potri.019G091200 [exp] 103 / 2e-26 AT3G19280 92 / 2e-23 fucosyltransferase 11 (.1) Potri.019G082200 [exp] 65 / 4e-11 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.013G111200 [exp] 63 / 2e-10 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00852 [flax] [poplar] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Lus10014060 pacid=23156752 polypeptide=Lus10014060 locus=Lus10014060.g ID=Lus10014060.BGIv1.0 annot-version=v1.0 ATGGGTATCCTCTCGAATCTGAGGAACCCGAGGAATCCAGAAGATGGGTTGTTGATATCATCAACTTCTTCTTCTTCTTCTTCACCAACAAGCAAAAGGA AATGGTCAAACTTTCTGCCGGTTTTCATCGCCCTTGTGGTCCTAGTGGAGATCGCCTTTCTGGGTCGTCTGGACATGGCTAAGAACGCTGCTGCTAAGGT TGATTCTTGGGCAGGCAGCGTCTTGTACAACATGTCGCCTCCTGTTTTGAAAGAGGAGGCGGCTGCTACTTTACCTAGGATTGATGATGGAGTTTTGGGG TTGGAGAGCTGTGAGGATTGGTTGGAGAGGGAGGATTCTGTCACTTATTCTAGGGATTTTGATAAAGATCCCATCTTGGTCGCCGGCGCTGAGAAGGAGT GGAGAGCTTGTGCTGTGGGGTGCCAGTTTGGATATGACTCCAGCAAAACTCCTGATGCAGTATTCGGTACATTGAGTGATCCGTCTGGAATTCTGAGCGT GCATAGATCGATGGAATCGGCTCAGTATTATCCGGAGAACGATATTGCTACCGCACGACGAAGGGGATACCGTATAGTAATGACTACAAGTCTATCCTCA GATGTGCCAGTTGGATATTTCTCCTGGGCGGAGTACGATATTATGGCACCTGTGCAGCCAAAGACTGAGAAAGCCCTTGCAGCTGCATTCATCTCAAACT GTGGTGCCCGCAACTTCCGGCTGCAAGTCCTCGACAGGCTTGAGAAACTGAAAATCCCAATAGATTCTTACGGTGCTTGCCACCGGAATCGTGATGGAAG AGTGAACAAAGTGGAGGCTCTTAAGCACTATAAATTCAGCCTGGCTTTTGAGAATTCTAATGAAGAGGATTATGTTACTGAGAAATTCTTCCAGTCTCTC GTAGCTGGTACAATTCCGGTGGTGGTTGGTGCTCCGAACATCCAAGATTACGCTCCAGGCCCAGGAGCTATATTGCACATCAAGTCCCTTGAAGACATCG ACCTGGTTGCCAAGACCATGAACTATCTGTCCGGAAACTCTACCGCTTACAATCAGTCACTCAGGTATCTTGCTGACAATCAGTCACTCATGTATCTTGC TTACAATCAGTCACTCAGGTGGAAAGTGGACGGTCCATCGGACTCCTTCAAGGCTCTAGTGGATATGGCAGCTGTGCATTCATCGTGTCGTCTTTGCATC CACCTAGCAACTATGGTCCGCGAGAAAGAAGCAAGTCGTTTGGGATTCAAGAAACGGCCCTGCAGGTGCACGAGAGGGCCGGAGATTATACACCATTTGT ACGTAAGGGAACGAGGAAGGTTCAAAATGGAGTCCATATTCTTAGGGTCGGGGAACTTGACGATGGAGGCACTGGAGGAGGAGGTGCTGAAAAAGTTCAA GTCTTTAAAACACGTACCCATCTGGAAAGGAGAAAGGCCCGAAAGCATAAGAGGTGGAGACGATGAGTACAAGGTGTACAGAGTGTATCCGGTAGGGTTA ACGCAGAGGGAAGCGCTCTACTCTTTCAGATTTACGAATATCGACTTGCAGAATCACTTGGAGGCGAATCCGTGCCCGAAGCTAGAGGTCGTATTTGTGT AG
AA sequence Show only first row Show all	>Lus10014060 pacid=23156752 polypeptide=Lus10014060 locus=Lus10014060.g ID=Lus10014060.BGIv1.0 annot-version=v1.0 MGILSNLRNPRNPEDGLLISSTSSSSSSPTSKRKWSNFLPVFIALVVLVEIAFLGRLDMAKNAAAKVDSWAGSVLYNMSPPVLKEEAAATLPRIDDGVLG LESCEDWLEREDSVTYSRDFDKDPILVAGAEKEWRACAVGCQFGYDSSKTPDAVFGTLSDPSGILSVHRSMESAQYYPENDIATARRRGYRIVMTTSLSS DVPVGYFSWAEYDIMAPVQPKTEKALAAAFISNCGARNFRLQVLDRLEKLKIPIDSYGACHRNRDGRVNKVEALKHYKFSLAFENSNEEDYVTEKFFQSL VAGTIPVVVGAPNIQDYAPGPGAILHIKSLEDIDLVAKTMNYLSGNSTAYNQSLRYLADNQSLMYLAYNQSLRWKVDGPSDSFKALVDMAAVHSSCRLCI HLATMVREKEASRLGFKKRPCRCTRGPEIIHHLYVRERGRFKMESIFLGSGNLTMEALEEEVLKKFKSLKHVPIWKGERPESIRGGDDEYKVYRVYPVGL TQREALYSFRFTNIDLQNHLEANPCPKLEVVFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10014060 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	10.8	0.8553
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	19.5	0.7990
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	19.9	0.8448
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	20.3	0.8416
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	30.2	0.7859
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	30.4	0.8330
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10032625 [exp]	34.5	0.8008
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	37.7	0.7539
AT4G32600			RING/U-box superfamily protein...		Lus10008106 [exp]	40.8	0.7477
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	41.6	0.7917

Compare expression of checked genes

Lus10014060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.