Plant FIBer expression Database

Lus10014061 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G140701
[exp]
52 / 2e-08 AT4G33980 48 / 9e-07 unknown protein
Potri.009G101400
[exp]
40 / 0.0004 AT5G42900 57 / 2e-09 cold regulated gene 27 (.1.2.3)
Potri.002G125900
[exp]
39 / 0.001 AT5G42900 107 / 8e-28 cold regulated gene 27 (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10014061 pacid=23156771 polypeptide=Lus10014061 locus=Lus10014061.g ID=Lus10014061.BGIv1.0 annot-version=v1.0
ATGGAGCGGAATATTCGGCAGGATGGCGCAGACGGTGGATTTCTACGCACTCGGTTGACCCGGCGTCGCTATTCGAGCTATTGCGACGCTCGAGAGACTC
CGGGTTCATGCCCGTCCACAGTCTGGACAAATGAGAAGCACCACAAGTATATTCATTCGTTAGAAGCATCACTTGTTCAACAGCTAAACCAATCCATCAG
TTTACGTGGCGGCTTTCGAGGGCCATGTTCATCCTCACAGAACGACGACTGTAATTCGTCGCAGCAGCTTGCTTACGATTGTGAAAGAAATGAAGACTTG
TTGGATTATTCATCACATTCTCGCCACATTGCTCGAGGGAAAGATGGGAAACGCACGAGAAATGAGCTACCTGTTTCCTCTGAAAGCTCGAAAGAATCAG
ACTGCTGCTTAAGCCGTCAAAATTCTGTCCAGAGTGTTTTAGGTACTGAGTCACTTGCTTATTCTAAGTTTATGCTTTACATTCTCGCGAATTCGGTGCT
TAATAGGGTTCAGATCAAAATTTCATCGATGGCGAATCGGAAGAAAACTCGAGCTATGCTTCCATGA
AA sequence
>Lus10014061 pacid=23156771 polypeptide=Lus10014061 locus=Lus10014061.g ID=Lus10014061.BGIv1.0 annot-version=v1.0
MERNIRQDGADGGFLRTRLTRRRYSSYCDARETPGSCPSTVWTNEKHHKYIHSLEASLVQQLNQSISLRGGFRGPCSSSQNDDCNSSQQLAYDCERNEDL
LDYSSHSRHIARGKDGKRTRNELPVSSESSKESDCCLSRQNSVQSVLGTESLAYSKFMLYILANSVLNRVQIKISSMANRKKTRAMLP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014061
[exp]
0 1
AT3G20810 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II... Lus10031247
[exp]
2.2 0.8525
AT3G46640 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, H... Lus10040780
[exp]
3.5 0.8426
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10015720
[exp]
3.7 0.8476
Lus10005752
[exp]
5.2 0.8020
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10021629
[exp]
5.3 0.8026
AT3G20810 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II... Lus10031818
[exp]
5.5 0.8144
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10019077
[exp]
5.5 0.8099
AT5G61380 AtTOC1, TOC1, A... PSEUDO-RESPONSE REGULATOR 1, T... Lus10000566
[exp]
6.6 0.8379
Lus10027443
[exp]
6.9 0.8025
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10018201
[exp]
8.4 0.7991

Lus10014061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.