Plant FIBer expression Database

Lus10014063 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12750 224 / 6e-71 ZIP1 zinc transporter 1 precursor (.1)
AT1G31260 199 / 6e-61 ZIP10 zinc transporter 10 precursor (.1)
AT1G05300 185 / 2e-55 ZIP5 zinc transporter 5 precursor (.1.2)
AT5G62160 182 / 2e-54 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1)
AT2G32270 180 / 8e-54 ZIP3 zinc transporter 3 precursor (.1)
AT2G04032 180 / 1e-53 ZIP7 zinc transporter 7 precursor (.1)
AT4G19680 177 / 1e-52 ATIRT2, IRT2 iron regulated transporter 2 (.1.2)
AT4G19690 166 / 2e-48 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2)
AT4G33020 159 / 1e-45 ATZIP9, ZIP9 ZIP metal ion transporter family (.1)
AT2G30080 157 / 5e-45 ATZIP6, ZIP6 ZIP metal ion transporter family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014062
[exp]
313 / 2e-105 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1)
Lus10019854
[exp]
272 / 8e-91 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1)
Lus10024107
[exp]
254 / 2e-82 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1)
Lus10041613
[exp]
252 / 1e-81 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1)
Lus10041647
[exp]
247 / 2e-79 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1)
Lus10006935
[exp]
201 / 8e-62 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1)
Lus10019853
[exp]
189 / 2e-60 AT3G12750 84 / 1e-20 zinc transporter 1 precursor (.1)
Lus10040615
[exp]
196 / 7e-60 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1)
Lus10031307
[exp]
115 / 4e-31 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G006800
[exp]
241 / 3e-77 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2)
Potri.006G006600
[exp]
239 / 8e-77 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2)
Potri.001G160400
[exp]
239 / 1e-76 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1)
Potri.010G173300
[exp]
233 / 3e-74 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1)
Potri.008G083100
[exp]
232 / 9e-74 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1)
Potri.010G134300
[exp]
197 / 3e-60 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1)
Potri.015G117900
[exp]
187 / 1e-56 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2)
Potri.015G117700
[exp]
186 / 4e-56 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1)
Potri.010G135400
[exp]
160 / 4e-46 AT2G04032 325 / 4e-110 zinc transporter 7 precursor (.1)
Potri.009G074100
[exp]
143 / 9e-40 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF02535 Zip ZIP Zinc transporter
Representative CDS sequence
>Lus10014063 pacid=23156754 polypeptide=Lus10014063 locus=Lus10014063.g ID=Lus10014063.BGIv1.0 annot-version=v1.0
ATGAAATCATGTGACTTGTCGAGCAGCGGATTATCGTCTAATGAGGGCGATGAAGGAGGTGAAGTAATGATCCAGTACAAACTGCTGGCTGTCGCTTCGA
TCCTCGTGGCGGGAGGCATTGGCGTTTGCTTGCCATGGCTTCCTAAATTGACCGTTATTGCCAAGACGAAGGAGGACATCGCGACACGTGGCGGAGGAGA
CGGTATGGTATTGATCGGGAAGGCATTTGCCGGCGGTGTGATACTCGCTACGGGGTTGGTCCACGTGTTGCCCGAAGCAGTGGAGAAGCTGGGGTCGCCC
TGTCTCAGCGAAGTGCCTTGGGGGAAGTTCCCGTTTGCCGGGTTCGTATCCATGATGTTTTGTTTGACCACTTTGATGTTTGAATCTCTAGCCGTTGGAT
TTCATCGGAGACAACAGCACCAAGGTGGTGACGGTGGCGATGATAAGACAGTGTCGTGCGACTATGACCGTGGAGTAGTCGACCATCATGAACGACGCGT
CTCGCGTCGTGACTTGAGTCACGTCATTGATGATGATGAGACGGTATGTAGACGGAAGATTGTTTCACAAATATTGGAAGTGGGAGTAGTGGTGGATTCA
ATCATCATCGGGATATCACTGGGAACCTGTAAGAATGCCAAAACAATGAAGCCCCTAATGGCAGTTCTGACATTTCACCAATTCTTCGAAGGGGTTGGTA
TTGGAGAAACAATCTCTCATGCGGAAATGAAGGTGGTAATAAGGGTGGTTATGGCGTTAATCTTCACGATCATAGCACCAGTGGGGATCGGAATTGGAAT
GGGGATATCAAACCATTACAAGGATAACAGTTCGACTTCTCTAATCATGGAGGGACTGTTCCACTCAGCATCAGCTGGGATCATAATTTACATGGCTATT
ATCAACTTACTGGCCACACATTTCATGAGCTTGAAGATGTTGTCCTCTGATTTCAGAATTCAATTCGGGAGTTATACTTCTCTTATCCTTGGAGCTGCTT
CCATGTCCCTCTTGAACATTCTTTATTGA
AA sequence
>Lus10014063 pacid=23156754 polypeptide=Lus10014063 locus=Lus10014063.g ID=Lus10014063.BGIv1.0 annot-version=v1.0
MKSCDLSSSGLSSNEGDEGGEVMIQYKLLAVASILVAGGIGVCLPWLPKLTVIAKTKEDIATRGGGDGMVLIGKAFAGGVILATGLVHVLPEAVEKLGSP
CLSEVPWGKFPFAGFVSMMFCLTTLMFESLAVGFHRRQQHQGGDGGDDKTVSCDYDRGVVDHHERRVSRRDLSHVIDDDETVCRRKIVSQILEVGVVVDS
IIIGISLGTCKNAKTMKPLMAVLTFHQFFEGVGIGETISHAEMKVVIRVVMALIFTIIAPVGIGIGMGISNHYKDNSSTSLIMEGLFHSASAGIIIYMAI
INLLATHFMSLKMLSSDFRIQFGSYTSLILGAASMSLLNILY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12750 ZIP1 zinc transporter 1 precursor (... Lus10014063
[exp]
0 1

Lus10014063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.