Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49720 280 / 8e-91 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT1G45249 260 / 9e-83 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT4G34000 163 / 2e-45 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G19290 162 / 3e-45 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT5G42910 125 / 2e-32 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56850 123 / 4e-32 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 95 / 5e-22 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G44460 94 / 3e-21 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 84 / 2e-17 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35900 59 / 1e-09 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027897 [exp] 379 / 5e-129 AT3G19290 289 / 1e-93 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10019850 [exp] 374 / 5e-129 AT4G34000 189 / 2e-57 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Lus10009755 [exp] 219 / 2e-66 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10002399 [exp] 163 / 9e-46 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 157 / 1e-43 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10008928 [exp] 114 / 6e-30 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 114 / 2e-28 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 112 / 4e-28 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10017049 [exp] 111 / 7e-27 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101200 [exp] 428 / 1e-148 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.004G140600 [exp] 400 / 2e-137 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 301 / 6e-99 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 193 / 8e-57 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.006G083000 [exp] 114 / 3e-28 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.008G010800 [exp] 111 / 1e-27 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 111 / 2e-27 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 110 / 3e-27 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 100 / 1e-23 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 99 / 2e-23 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10014066 pacid=23156766 polypeptide=Lus10014066 locus=Lus10014066.g ID=Lus10014066.BGIv1.0 annot-version=v1.0 ATGGGGTCTCATTTCAACTTCAACAACTTTGGCAACATGGGAGATGGAGCTGGCACGAGGCCGCCAGTTGTGAGCTCGCCACTAATTCGGCAGTCTTCTG TATACTCCTTAACCTTTGATGAGTTCCAGAACACCTGGGGTGGAAGTCTAGGGAAGGATTTCGGGTCGATGAACATGGACGAGTTATTAAAGAACATATG CACTGCTGAGGAAACACATGCTATTACAAGCACCACTGGTGGTGTTGCCGAAACTTCTTCTGGTGGGAACAACCTACAGAGACAAGGGTCCTTGACCTTG CCTAGGACATTGAGTCAGAAAACCGTTGACGAGGTCTGGAAAGATTTCATAAAAGAAACCAGCTCTGCTGCAAAAGATGTTGCGAGACCTCCTGATCCGC CTCAAAGGCAACAGACTTTGGGAGAGATGACTTTGGAGGAGTTCTTGTTGAAGGCAGGAGTAGTGAGGGAGGATGCCAATAAGCAGCATATGGGAAGACC GAATAACGTTGGATTCTTCAGTGATTTGGCTCAACTGAACAATGACAACAGCGGGTTGGCTCTTGGGTTCCAACCACAGCAAGTGAATAGAGATAATAAT AATAATAACAATAGTTTTGTCATGAATCAAGTTTCCAACTTGGGAATGAATGTCGGACCTTCTCCTCAGCAGTTGCATCAATCCAGGAATCAAAACCAAC AGCAGCAGCCTCTCTTTCCCAAGCCAGCTACTGTTGGATTTGCATCTCCGATGCATATGGCGAACGGTGCTCAGCTTGCGAGTCCAGGGGCAAGGAGCTC AGCTGTTGGAATGGGGAACACAGGGATAAACAACAATGGTTTGGCACGCAGGGGAAATGGTTTAGGAAATGCAGGTGTAACAGTCGCAACAGCATCTCCT GGAAACCGGATATCCCCATCAGATGGAGTTTCTAGGAGCGATGCCGACATATCATCAGTCTCGCCAATCCCTTATGTTTTTAGCCGAGGAAGGAAGCCTA ATGCAGCTTTGGAGAAGGTTGTTGAGAGAAGACACAGAAGGATGATCAAGAATAGGGAGTCTGCAGCACGATCTAGAGCTCGCAAGCAGGCATACACACT AGAACTGGAAGCTGAGATTGCAAAACTGAAGGAGATGAATGAAGAACTGGAGAGGAAACAGGATGAACTAATGCAAATGCAGAAAAACCAGTTCTTGGAG AAAATGAACCATCCGTGGGGAGGTAAAAGGCTTTGCTTGAGGAGGACACTGACAGGACCTTGGTAG
AA sequence Show only first row Show all	>Lus10014066 pacid=23156766 polypeptide=Lus10014066 locus=Lus10014066.g ID=Lus10014066.BGIv1.0 annot-version=v1.0 MGSHFNFNNFGNMGDGAGTRPPVVSSPLIRQSSVYSLTFDEFQNTWGGSLGKDFGSMNMDELLKNICTAEETHAITSTTGGVAETSSGGNNLQRQGSLTL PRTLSQKTVDEVWKDFIKETSSAAKDVARPPDPPQRQQTLGEMTLEEFLLKAGVVREDANKQHMGRPNNVGFFSDLAQLNNDNSGLALGFQPQQVNRDNN NNNNSFVMNQVSNLGMNVGPSPQQLHQSRNQNQQQQPLFPKPATVGFASPMHMANGAQLASPGARSSAVGMGNTGINNNGLARRGNGLGNAGVTVATASP GNRISPSDGVSRSDADISSVSPIPYVFSRGRKPNAALEKVVERRHRRMIKNRESAARSRARKQAYTLELEAEIAKLKEMNEELERKQDELMQMQKNQFLE KMNHPWGGKRLCLRRTLTGPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	0	1
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Lus10003435 [exp]	3.9	0.9543
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	6.5	0.9222
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	6.9	0.9496
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	7.7	0.9354
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	9.9	0.9498
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	11.4	0.9424
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	12.3	0.9493
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10030414 [exp]	12.7	0.9345
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	14.5	0.9457
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	15.3	0.9487

Compare expression of checked genes

Lus10014066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.