Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34020 451 / 2e-156 AtDJ1C DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) AT1G53280 277 / 7e-89 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) AT3G14990 258 / 3e-82 AtDJ1A DJ-1 homolog A, Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019849 [exp] 703 / 0 AT4G34020 537 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10020345 [exp] 292 / 1e-94 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10009525 [exp] 289 / 2e-93 AT1G53280 562 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100900 [exp] 536 / 0 AT4G34020 551 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Potri.011G111900 [exp] 306 / 4e-100 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01965 [flax] [poplar] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Lus10014067 pacid=23156783 polypeptide=Lus10014067 locus=Lus10014067.g ID=Lus10014067.BGIv1.0 annot-version=v1.0 ATGGAGTCCTTGTTCTGTATATCCTCTGCTCCTCCACCACCAAAGCTTCGCTCTTTCAAGCTCTACACAGTGGCTGTCTCTCCAACTTCCTCCCTCTCCG TGGAATCTCCTTCCCAGAGAAAATCAGCCGCTCCCATTAAGCAGTCTAGGAAACCCTCTTCACAGACTGCTTCCTCTCCAATACCCACCTCGACATCCTC AGTCCCTCCCAAGAAGGTCCTTGTTCCAATAGGTTTCGGCACTGAAGAAATGGAAGCTGTGATTATGATTGATGTTCTGCGGCGAGCTGGCGCTAAGGTA ACTGTGGCCTCAGTGGAAGCACAGTTGAAGGTTGAGGCTGCAAGCGGTACTACATTAGTTGCCGACACCACCATTTCTGCTTGCTCTGACGAGGTTTTCG ATCTTGTCGCTTTGCCGATAGATTCTTATCTTCTACGAGCTGTGTCTCAGGGAGGAATGCCAGGATCAGCTAGATTGAGAGATTGCGAAGTTCTCCGTGA AATTACGAGCAAACAGGCCGATGCAGAAAGGTTATACGGTGCGATATGTGCAGCTCCAGCCATCACACTTCTTCCATGGGGCCTCCTTAAAAGGAAGAAG ATGACTGGCCACCCTGCTTTCAAGGATGCGCTTCCTACCTTCTGGGCTGTTGAAACAAATCTTCAAGTTTCGGGGCACTTGACAACGAGCCGCGGCCCTG GGACGTCTTTTCAGTTTGCTTTATCCTTTGTGGGTCAGCTGTTTGGGGAGTCTGTTGCTAGGGATGTTGGAGAAAGCTTGTTGATGCATACATGTGACAG TGACTCCAGAAAAGAAGAGTTCAACGCAAAAGAACGGTCCATCGGCCATAATCCCCGTGTGCTACTTCCAATTGCGAACGGTTCTGAGGAAATTGATATA GTTACTATTGTAGACATCTTGAGGCGAGCTAAGGCGGAAGTTTTCGTTGCTTCTGTTCAAAAATCTCTGCAAATTGTGGCATCACAAGGTACAAAAATTG TCGCAGACAAGTTGATTAGCAATGCTGCTGAATCTGTATATGATCTCATCATTCTACCGGGTGGTATCGATGGATCAGAACGCCTACAGAAATCGAAGGA TAAGAGAGTCGCTGAACATCCTGGCATTACTAATGAGCTAACCAGCAACGTTGCAGATAGTACGAAAGTCGTGATTGATGGAAAGCTGATCACAAGTAAG GGACACTCCACTTTAACGGATTTTGCACTGTCTATCATTAGCAAGTTGTTTGGTCATGCAAGAGCGAGAAGTGTAGCCGAAGGCCTTGTGTTTGATTATC CTAGAAGTGAGTAA
AA sequence Show only first row Show all	>Lus10014067 pacid=23156783 polypeptide=Lus10014067 locus=Lus10014067.g ID=Lus10014067.BGIv1.0 annot-version=v1.0 MESLFCISSAPPPPKLRSFKLYTVAVSPTSSLSVESPSQRKSAAPIKQSRKPSSQTASSPIPTSTSSVPPKKVLVPIGFGTEEMEAVIMIDVLRRAGAKV TVASVEAQLKVEAASGTTLVADTTISACSDEVFDLVALPIDSYLLRAVSQGGMPGSARLRDCEVLREITSKQADAERLYGAICAAPAITLLPWGLLKRKK MTGHPAFKDALPTFWAVETNLQVSGHLTTSRGPGTSFQFALSFVGQLFGESVARDVGESLLMHTCDSDSRKEEFNAKERSIGHNPRVLLPIANGSEEIDI VTIVDILRRAKAEVFVASVQKSLQIVASQGTKIVADKLISNAAESVYDLIILPGGIDGSERLQKSKDKRVAEHPGITNELTSNVADSTKVVIDGKLITSK GHSTLTDFALSIISKLFGHARARSVAEGLVFDYPRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	0	1
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Lus10012250 [exp]	1.4	0.8981
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	1.7	0.8996
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	2.2	0.8759
AT5G65540			unknown protein		Lus10025712 [exp]	6.7	0.8898
AT2G34730			myosin heavy chain-related (.1...		Lus10023264 [exp]	6.9	0.8801
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	7.7	0.8536
					Lus10027262 [exp]	11.0	0.8123
AT1G70250			receptor serine/threonine kina...		Lus10008335 [exp]	12.8	0.7754
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	13.1	0.8544
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	13.1	0.8455

Compare expression of checked genes

Lus10014067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.