Plant FIBer expression Database

Lus10014068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34030 920 / 0 MCCB 3-methylcrotonyl-CoA carboxylase (.1)
AT2G38040 45 / 0.0001 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019848
[exp]
1132 / 0 AT4G34030 921 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G100800
[exp]
1017 / 0 AT4G34030 921 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
Potri.014G081000
[exp]
49 / 1e-05 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Potri.006G095800
[exp]
48 / 2e-05 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Potri.016G110500
[exp]
45 / 0.0001 AT2G38040 890 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF01039 Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence
>Lus10014068 pacid=23156838 polypeptide=Lus10014068 locus=Lus10014068.g ID=Lus10014068.BGIv1.0 annot-version=v1.0
ATGTTAAGGATCGTGCCGAGAAGAATTGCTTCGGCTTCTTTAGCAGCATCGTCCAAGTCAAGCTGCTCGTCATCTCACCTACTGCGCCACACAAGAGGTT
TCAGCTTCGGAGTTCTTCCCGATGGTCTGGACAGGACTTCCGACGGCTTTTCCCGCAACTCTTTGGCTATGGAATCTCTCATTTCCCAGCTCCAATCCAC
CATAAACCAGGTTCTGGCCGGGGGAGGAGAATCGGCTGTCAAAAGGAACAGAAGCAGGAACAAGCTTTTGCCCAGAGAAAGAATTGACAAGCTGCTTGAT
CCTGGTTCTTCCTTTCTTGAGCTTTCTCAGCTCGCAGGCCATGAACTGTATGATGATTCTCTGCCTTCAGGTGGAATAGTTACTGGAATAGGTCCTGTTC
ACGGCCGACTTTGCATGTTTGTAGCTAACGATCCTACTGTGAAAGGGGGGACTTATTATCCCATTACAGTGAAGAAGCATCTAAGGGCACAAGAGATTGC
TGCCCGGTGTAGACTTCCTTGCATCTATCTTGTCGATAGCGGAGGTGCTTTCCTTCCCAAACAAGCGGAGGTCTTCCCTGACAAGGATAATTTCGGAAGG
ATTTTCTTCAATCAAGCTGTAATGTCTGCTGAAGGCATACCTCAGATTGCACTGGTGTTGGGTTCTTGTACCGCAGGCGGTGCCTACATCCCTGCAATGG
CAGATGAAAGTGTGATGGTCAAGGGAAATGCAACCATATTTTTGGCTGGACCACCACTTGTCAAGGCTGCTACAGGGGAGGAAGTATCGGCTGAGGATTT
AGGAGGCGCTTCATTGCATTGCAAAACATCAGGAGTTTCGGACTATTTTGCTCAAGATGAATTGCATGCACTTGCTCTTGGAAGAAACATTATCAAGAAT
TTACATATGGCTGGAAAACATGGCGTGACGAGTGAAGGACATGATTTTGTTCCCGAGTACAAGGAGCCACTGTATGACATAAAGGAACTGAGATCTATTG
CCCCAGCTGATCACAAGCAGGCCTTTGATATTCGATCTGTTATTGCTCGAATTGTTGATGGAAGTGAATTTGACGAATTCAAGAAACTATATGGAACAAC
CCTGGTAACTGGATTTGCGAAAATTTTGGGGCAGCCCGTGGGAATCATTGGAAACAACGGCATATTGTTTAATGAATCTGCTCTGAAAGGCGCACATTTC
ATTGAACTATGTAGTCAGCGTAAGATTCCTCTTGTTTTCTTGCAGAACATCACTGGATTCATGGTGGGATCAAGGTCTGAGGCAACTGGTATAGCGAAAT
CCGGAGCGAAAATGGTTATGGCTGTTTCTTGTGCCAAGGTTCCTAAGGTAACTATAATGGTTGGTGGAAGCTTCGGTGCTGGAAACTATGCAATGTGCGG
TCGTGCCTATAGTCCAGACTTCCTTTTCCTTTGGCCAAATGCCAGAATTTCAGTCATGGGCGGTGCTCAGTCTGCCGGGGTGCTATCTCAGATCGAAAAG
GCAAACAAGAAAAAGCAGGGAATTCAGTGGACAAAGGAAGAGGAGGAAAGTTTCAAGGCGAAGGTGGTGGAGGCTTACGAAAGAGAAGGGAGCTCGTACT
ATTCGACCGCAAGGCTTTGGGACGATGGCATCATTGATCCAGCAGATACCAGAAAGGTAATAGGGCTCTGCATATCAGCTGCCGGGAACCGTCCTGTAGA
AGACACAAGGTTTGGTGTGTTCAGGATGTAG
AA sequence
>Lus10014068 pacid=23156838 polypeptide=Lus10014068 locus=Lus10014068.g ID=Lus10014068.BGIv1.0 annot-version=v1.0
MLRIVPRRIASASLAASSKSSCSSSHLLRHTRGFSFGVLPDGLDRTSDGFSRNSLAMESLISQLQSTINQVLAGGGESAVKRNRSRNKLLPRERIDKLLD
PGSSFLELSQLAGHELYDDSLPSGGIVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAARCRLPCIYLVDSGGAFLPKQAEVFPDKDNFGR
IFFNQAVMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNATIFLAGPPLVKAATGEEVSAEDLGGASLHCKTSGVSDYFAQDELHALALGRNIIKN
LHMAGKHGVTSEGHDFVPEYKEPLYDIKELRSIAPADHKQAFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKILGQPVGIIGNNGILFNESALKGAHF
IELCSQRKIPLVFLQNITGFMVGSRSEATGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPDFLFLWPNARISVMGGAQSAGVLSQIEK
ANKKKQGIQWTKEEEESFKAKVVEAYEREGSSYYSTARLWDDGIIDPADTRKVIGLCISAAGNRPVEDTRFGVFRM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34030 MCCB 3-methylcrotonyl-CoA carboxyla... Lus10014068
[exp]
0 1
AT1G18270 ketose-bisphosphate aldolase c... Lus10008754
[exp]
1.0 0.9798
AT1G19530 unknown protein Lus10002540
[exp]
2.4 0.9764
AT2G37380 MAKR3 MEMBRANE-ASSOCIATED KINASE REG... Lus10025286
[exp]
3.5 0.9673
AT4G21920 unknown protein Lus10001143
[exp]
3.7 0.9639
AT2G17080 Arabidopsis protein of unknown... Lus10025124
[exp]
3.9 0.9649
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Lus10007084
[exp]
4.4 0.9585
AT3G25910 Protein of unknown function (D... Lus10019436
[exp]
4.5 0.9570
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10042934
[exp]
4.9 0.9632
AT1G57610 Protein of unknown function (D... Lus10034435
[exp]
5.3 0.9610
AT2G18700 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE... Lus10015509
[exp]
6.6 0.9621

Lus10014068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.