Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19300 758 / 0 Protein kinase superfamily protein (.1) AT1G49730 733 / 0 Protein kinase superfamily protein (.1.2.3.4) AT5G54590 248 / 5e-75 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 243 / 2e-73 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G07070 238 / 1e-71 Protein kinase superfamily protein (.1) AT3G58690 236 / 7e-71 Protein kinase superfamily protein (.1) AT3G24540 238 / 2e-70 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G20650 234 / 2e-70 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G06840 246 / 5e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G38560 241 / 5e-70 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019844 [exp] 1223 / 0 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10032672 [exp] 246 / 2e-74 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10043083 [exp] 246 / 4e-74 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10038174 [exp] 250 / 6e-74 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008491 [exp] 241 / 2e-72 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10030741 [exp] 239 / 3e-72 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10038172 [exp] 250 / 6e-72 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008540 [exp] 238 / 2e-71 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10025926 [exp] 246 / 4e-70 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100400 [exp] 940 / 0 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.004G140301 [exp] 900 / 0 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.013G025700 [exp] 244 / 1e-73 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.002G009300 [exp] 241 / 4e-73 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.011G131200 [exp] 243 / 5e-73 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.001G415300 [exp] 242 / 5e-73 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.005G252000 [exp] 241 / 7e-73 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.004G113400 [exp] 243 / 1e-72 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 241 / 2e-72 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.001G467000 [exp] 250 / 4e-72 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014071 pacid=23156800 polypeptide=Lus10014071 locus=Lus10014071.g ID=Lus10014071.BGIv1.0 annot-version=v1.0 ATGGCGGTGGGAGTCAGGCAGGCGGTCTTGCTTTGGGGTTTGCTCGCTTTTCCGGCAATGCTTATGCTGCTTCTTTCTCCACCGGTCATTGCAGATTGCC CCTTGGATCTAAGTGGCTCAAATTTCACATTAGCAGCCTCATTGTGTTCTCATAAAGAAGACCGAGGGAAGTGTTGCCGGTATATGAACGCTTTCATTGC TGTATCTGTTGCTCGCTACGCAAATGCAACCAGTAACTTAGGGGTCCCCTCCAGTATATCAGATATGTGTATTAGCTCCATCACTCAAACCATGCGACTT TACGGAGTTCCGCAGAATGCAACTGTTTTCTGTGGACTCGGTACAAAAATCCCCGTTAATTACAAGTGCGAGGGTCGAACCACTGTCGGCGAGATGCTGC AGTCTCCGGAATTTGATACCGTTGTGCAAAACTGCAAGGTCCCGGTTTCAGGGGAAAGGGATTGCAGGAAATGTTTGAATGCAGACATCATATACCTTCA TCATTTAGTTGGGATGGAAAATAACATCACGCTGAGTACTTGTAGGGATGCAGCTTTTGTTGCCCTTACAAGTCAAGTTGGTAGTGCATCAACCATCGAT TTTGCTCGTTGCTTCTTTCAAGTTGATGGCCTTGTAATGCCTCCAGGGTCACCTCCTCCTGCAAACACCACCGAGGCTTCTCCTAGTCCCTTATCGGCTT CAAGCCCCGATCAAGCAGGGTTGGGACTCATTCAAGAGGATAAACGTCACCATCCCTACCACTTGACGTTAATTCCTGCAATCGGGATCGCAGTCACACT GTTTGCTATCATCATGTTAGTGGTCTTGGTAGTACTTATTCGACAGAAGAGCAGGGAGTTGGACGAACCAGACAATCTGGAGAAGGCATCTTCTAAAGCG TTCTCTGCACGGACTACAAGAAAATTTCAAGAAGGGTCTGCAGCGATGTTTCGGAAATTTGGTTTTAAGGAAATAAAGAAAGCAACAGATACCTTTACCA CAGTTATAGGTGAAGGTGGATTCGGAGTGGTCTACAAAGCTCAGTTCGGTGATGGCTCAGTGGTAGCGGTGAAGAGGATGAACAAAGTATCAGAACAAGG AGAAGATGAGTTCTGCAAAGAGATTGAACTTCTTGCTCGATTGCATCACCGTCATTTAGTATCTCTACGAGGCTTCTGTGTAGAAAAACATGAGAGATTC CTTATGTATGAATACATGGCAAATGGAAGTCTGAAGGATAATCTGCACTCTCCTGGAAAAGCTCCTCTGAGTTGGCAGACCAGAATCCAAATCGCAATCG ATGTGGCTAATGCTCTGGAGTACCTCCATTTTTACTGTGATCCGCCTCTTTGCCATGGAGACATCAAGTCCAGCAACATCTTGCTGGATGAAACATATGT AGCTAAGGTTGCAGATTTTGGACTTGCACATGCTTCAAAAGATGGTTCAATATGCTTTGAACCTGTAAATACTACTGATATCAGAGGGACCCCAGGGTAT ATGGATCCTGAATATGTCGTCACTCAAGAGCTCACAGAGAAAAGCGATGTCTACAGCTACGGAGTGGTTCTGTTGGAGATTGTTACGGGAAGGCGAGCGA TACAAGACAACAAGAATCTGGTGGAATGGTCCCAAACATTCATGGTTTCAGAATCGAGACTGATCGAGTTAGTCGATCCAGGTGTCAAGGAATCTTTCGA CTTCGACCAGCTACAAACGGTTGCCAAAATCGTGAGATGGTGCACCCAGAAGGAAGCCCGCGCCAGGCCTTCAATTAAGCAGGTACTTAGGCTGCTGCAC GAGAGCTCGGACCCGTTGCACAGCGGGTTCGTTCAAGCGTTGGAAGACGAAGAATTCGAAGGGAACGCCGGCAGAGGAAGGAGTAGAAGTAAAGGGAAAA CGAACAGAAGTGGTGATGTAATTTTCCACAGTGGAGATGTTAGATGTCTTGCCTCCTCTTCGAGTACATCGAGGTCGTATTGTAGCCGAACCTTTTTACT TGAAACTGGTTCACCTCAGTCGCCCAACAACAGTAGCCAACTATAG
AA sequence Show only first row Show all	>Lus10014071 pacid=23156800 polypeptide=Lus10014071 locus=Lus10014071.g ID=Lus10014071.BGIv1.0 annot-version=v1.0 MAVGVRQAVLLWGLLAFPAMLMLLLSPPVIADCPLDLSGSNFTLAASLCSHKEDRGKCCRYMNAFIAVSVARYANATSNLGVPSSISDMCISSITQTMRL YGVPQNATVFCGLGTKIPVNYKCEGRTTVGEMLQSPEFDTVVQNCKVPVSGERDCRKCLNADIIYLHHLVGMENNITLSTCRDAAFVALTSQVGSASTID FARCFFQVDGLVMPPGSPPPANTTEASPSPLSASSPDQAGLGLIQEDKRHHPYHLTLIPAIGIAVTLFAIIMLVVLVVLIRQKSRELDEPDNLEKASSKA FSARTTRKFQEGSAAMFRKFGFKEIKKATDTFTTVIGEGGFGVVYKAQFGDGSVVAVKRMNKVSEQGEDEFCKEIELLARLHHRHLVSLRGFCVEKHERF LMYEYMANGSLKDNLHSPGKAPLSWQTRIQIAIDVANALEYLHFYCDPPLCHGDIKSSNILLDETYVAKVADFGLAHASKDGSICFEPVNTTDIRGTPGY MDPEYVVTQELTEKSDVYSYGVVLLEIVTGRRAIQDNKNLVEWSQTFMVSESRLIELVDPGVKESFDFDQLQTVAKIVRWCTQKEARARPSIKQVLRLLH ESSDPLHSGFVQALEDEEFEGNAGRGRSRSKGKTNRSGDVIFHSGDVRCLASSSSTSRSYCSRTFLLETGSPQSPNNSSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19300			Protein kinase superfamily pro...		Lus10014071 [exp]	0	1
AT4G10890			unknown protein		Lus10001812 [exp]	1.0	0.9544
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	6.0	0.9400
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	8.8	0.9437
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	9.8	0.9429
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	10.0	0.9355
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	11.2	0.9272
AT1G03610			Protein of unknown function (D...		Lus10040646 [exp]	11.9	0.8672
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	19.1	0.9355
AT3G48970			Heavy metal transport/detoxifi...		Lus10039225 [exp]	20.5	0.9021
AT1G50660			unknown protein		Lus10032637 [exp]	21.7	0.8445

Compare expression of checked genes

Lus10014071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.