Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49740 508 / 1e-180 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 494 / 2e-174 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 446 / 2e-155 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 401 / 1e-137 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 330 / 8e-111 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019843 [exp] 748 / 0 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 451 / 1e-156 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 390 / 7e-134 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 384 / 6e-131 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 377 / 3e-129 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 376 / 1e-128 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 343 / 2e-115 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 278 / 1e-92 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 179 / 5e-54 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140200 [exp] 580 / 0 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 506 / 4e-179 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 500 / 1e-176 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 397 / 9e-136 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 395 / 8e-135 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 385 / 2e-132 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 383 / 5e-131 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 370 / 9e-126 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 362 / 9e-125 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014072 pacid=23156817 polypeptide=Lus10014072 locus=Lus10014072.g ID=Lus10014072.BGIv1.0 annot-version=v1.0 ATGATGCAATTGCAGGTAGCGGTGCTCTTTTTCCCTGTTCCATTTCTCATTTCTAAGCTGAATGATACTTTACTTTACTCCTCACACAATCAATCTTCTT CTTCTTTTCAGAGAACCATTTTCATAGCTGCTCTGTTAGCAGCAACTTTCCTCCTCACTTTCTCCTCTGCCCTCAAGGAAGGCCAAACTTGTGCAGCAAA CAGATTCTGCGACTCGGGGCTCCACTGCGAGACGTGTTTAACTAATGGGAGTGCCCGCCCTCGTTGCACCAGAACCCAACCCATTCTCCCAACTTCAAAG GTGAAGGGATTGCCATTCAATCGGTACACATGGCTAACAACCCACAATTCGTTTGCCAGATTAGGATCCAGGTCTGCAACTGGCTCCATCATTCTCACCA CTACCAATCAGCAGGACTCCATTACTAGTCAGCTCAATAATGGTGTTAGAGGTTTGATGCTAGACATGTATGACTACTTGAACGATATCTGGTTGTGCCA CTCGTTCGGAGGGACATGCTTCAACTTGACAGCTTTTCAACCAGCAGTGAATGTGCTCAAAGAGATTCAAGTCTTCCTAGAATCGAATCCCTCCGAAATC GTCACAATCTTCATAGAGGACTATGTCACATCCCCAAACGGACTCACCAAAGTTTTCGACGCTGCTGGTTTGCGGAAGTACTGGTTTCCTGCATCCCGGA TGCCCAAGAACGGTGGGGATTGGCCTACCGTGGATGACATGGCGAAGAACAATCAGCGTTTAGTAGTCTTTACCTCAAAGTCAGCCAAGGAAGCATCGGA AGGGATCGCTCATGAGTGGAGTTACGTGGTCGAAAACCAATACGGGAATAAAGGAATGGTGGATGGATCATGTCCGAACCGTGGAGAATCATCAGCCATG AATGTTAAAACAAGGTCATTAGTGTTGGTGAACTACTTCCCTGATAATCCAAATTTAGCACAGGCTTGTAAGCACAACTCTGCCCCTTTGATAAGCATGG TAAACACATGTCACCTCGCAGCTGGCAACCGATGGCCTAACTTCATCGCTGTCGATTTCTACATGAGGAGCGATGGAGGGGGAGCTCCACTAGCAACGGA TGTCACGAATGGAGGGATCGTTTGCGGGTGTGGGAACATCGCATCTTGCAGGCAAAGTATGGTGTATGGACAATGTGAGGTGCCAGAGGCTGCTGCAGCT CCAGCAGCTGTGTCAAATGAATCAAGCTCTGGTGCAGCTGTTCGGCAATGGTGGATGGTTGGAGCAACTATTACCTCAGTTTCTTCTCTCATCATGGGTC TACTTTAG
AA sequence Show only first row Show all	>Lus10014072 pacid=23156817 polypeptide=Lus10014072 locus=Lus10014072.g ID=Lus10014072.BGIv1.0 annot-version=v1.0 MMQLQVAVLFFPVPFLISKLNDTLLYSSHNQSSSSFQRTIFIAALLAATFLLTFSSALKEGQTCAANRFCDSGLHCETCLTNGSARPRCTRTQPILPTSK VKGLPFNRYTWLTTHNSFARLGSRSATGSIILTTTNQQDSITSQLNNGVRGLMLDMYDYLNDIWLCHSFGGTCFNLTAFQPAVNVLKEIQVFLESNPSEI VTIFIEDYVTSPNGLTKVFDAAGLRKYWFPASRMPKNGGDWPTVDDMAKNNQRLVVFTSKSAKEASEGIAHEWSYVVENQYGNKGMVDGSCPNRGESSAM NVKTRSLVLVNYFPDNPNLAQACKHNSAPLISMVNTCHLAAGNRWPNFIAVDFYMRSDGGGAPLATDVTNGGIVCGCGNIASCRQSMVYGQCEVPEAAAA PAAVSNESSSGAAVRQWWMVGATITSVSSLIMGLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	5.0	0.8371
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	11.1	0.7905
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	11.7	0.8066
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	13.9	0.8072
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	14.5	0.8206
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	15.8	0.8148
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	16.2	0.8338
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	17.8	0.8321
AT1G21550			Calcium-binding EF-hand family...		Lus10028657 [exp]	19.8	0.7974
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	19.9	0.8149

Compare expression of checked genes

Lus10014072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.