Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49780 254 / 4e-82 PUB26 plant U-box 26 (.1) AT3G19380 240 / 9e-77 PUB25 plant U-box 25 (.1) AT3G54850 72 / 6e-14 ATPUB14 plant U-box 14 (.1) AT5G11550 71 / 9e-14 ARM repeat superfamily protein (.1) AT5G01830 68 / 2e-12 ARM repeat superfamily protein (.1) AT3G46510 66 / 8e-12 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G52450 65 / 1e-11 PUB22 plant U-box 22 (.1) AT2G35930 65 / 2e-11 PUB23 plant U-box 23 (.1) AT3G49810 64 / 2e-11 ARM repeat superfamily protein (.1) AT5G65920 64 / 3e-11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019842 [exp] 367 / 4e-129 AT1G49780 276 / 3e-92 plant U-box 26 (.1) Lus10011691 [exp] 78 / 7e-17 AT5G11550 160 / 2e-48 ARM repeat superfamily protein (.1) Lus10038699 [exp] 75 / 8e-15 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10001079 [exp] 73 / 4e-14 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10040125 [exp] 71 / 8e-14 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10010598 [exp] 71 / 1e-13 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10040834 [exp] 68 / 2e-12 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 68 / 2e-12 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 67 / 6e-12 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140100 [exp] 343 / 7e-117 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.009G100200 [exp] 335 / 8e-114 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.006G240400 [exp] 91 / 9e-21 AT5G11550 179 / 1e-53 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 74 / 1e-14 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 73 / 3e-14 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 72 / 7e-14 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 70 / 3e-13 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.002G116600 [exp] 69 / 5e-13 AT3G49810 546 / 0.0 ARM repeat superfamily protein (.1) Potri.007G105300 [exp] 69 / 5e-13 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.005G063700 [exp] 69 / 6e-13 AT1G49780 139 / 3e-37 plant U-box 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10014073 pacid=23156796 polypeptide=Lus10014073 locus=Lus10014073.g ID=Lus10014073.BGIv1.0 annot-version=v1.0 ATGCCGGGAAGCTTAGAACCTCTCGATCTAACAGTCCAGATTCCTTACCACTTCCGGTGTCCGATTTCCCTGGAGCTTATGCGCGACCCCGTTACCGTCT CCACCGGTCAGACCTACGACCGCTCCAGCATCGAGTCATGGATCGCCACCGGAGTCGAGGAATCGATCATCCACGAAGCGCTTGCGGTTGTTGCCATGTT CCCGATTAGCGAGGCGGAAGCGGTTATGATCGCATCCGATTCGGAAAAGGTTAACTGTTTGGCTGAATTGCTGCTCCACTCATCGATCGAGGCGCGGGTG AACTCCGCGGCGGGGGTCGGGATGGGGGGCGTCGGCTCGCGCTGCGCCGGGACTCGCTGCTCCGATCTGAGGGCTCAGATCTCGTCCGTCGACGAGATCC ACGAAGGAGTGGTGGAGATGTTAAGGAATCCGTTCCCATATCCCCGCGCTCTGAAAGTAGGAATCAAGGCTCTGTTCGCCCTCTGCCTAGCCAAACAGAC TCGCCACAAGGCCATTGCAGCCGGCGCAATGGAGACGCTCGTCGACAGGCTAGCGGACTTCGACAAGTGCGACGCAGAGCGCGCTCTGGCAACCATGGAG CTCCTCTGCCGCGTTCCGTCAGGGTGCGAGGCTCTCGCCGATCACGCGCTGACAGTTCCTCTGCTCGTCAAAACAATACTTAAGATCTCCGATAGAGCAA CGGAGTACGCCGCCGGAGCTCTCCTCGCTCTTTGCTCCTCATCGGAGGAGTGCCAGAGGGAAGCCGTCAGGGCCGGAATACTGACCCAGATGCTTCTCCT CGTGCAGAGCGACTGCACGGACAGGGCGAAGAGGAAAGCTCAGATGCTTTTGAAACTGATGAGGGACTCGTGGCCGGAGGACTCGTCAGGATTCTCCGAC GACTTCGTTTACAGCGAGGTCGTCCCCTTTTGA
AA sequence Show only first row Show all	>Lus10014073 pacid=23156796 polypeptide=Lus10014073 locus=Lus10014073.g ID=Lus10014073.BGIv1.0 annot-version=v1.0 MPGSLEPLDLTVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWIATGVEESIIHEALAVVAMFPISEAEAVMIASDSEKVNCLAELLLHSSIEARV NSAAGVGMGGVGSRCAGTRCSDLRAQISSVDEIHEGVVEMLRNPFPYPRALKVGIKALFALCLAKQTRHKAIAAGAMETLVDRLADFDKCDAERALATME LLCRVPSGCEALADHALTVPLLVKTILKISDRATEYAAGALLALCSSSEECQREAVRAGILTQMLLLVQSDCTDRAKRKAQMLLKLMRDSWPEDSSGFSD DFVYSEVVPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	0	1
AT3G09032			unknown protein		Lus10027777 [exp]	2.4	0.8579
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10000023 [exp]	5.0	0.8386
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	5.5	0.8345
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	6.2	0.8441
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	8.7	0.8039
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	8.7	0.8445
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10037380 [exp]	11.4	0.7919
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	12.0	0.8416
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	12.5	0.8046
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	16.0	0.8290

Compare expression of checked genes

Lus10014073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.