Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34050 465 / 1e-168 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G26220 288 / 4e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G67980 258 / 4e-87 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G67990 235 / 3e-78 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24735 235 / 5e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G62000 166 / 3e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 153 / 3e-45 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019841 [exp] 508 / 0 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 485 / 1e-176 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 485 / 2e-176 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034584 [exp] 244 / 2e-81 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10012913 [exp] 238 / 7e-79 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009484 [exp] 233 / 6e-75 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021804 [exp] 161 / 1e-49 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036339 [exp] 163 / 3e-49 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 109 / 1e-28 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099800 [exp] 457 / 8e-166 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 453 / 5e-164 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.018G070300 [exp] 282 / 2e-96 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136600 [exp] 250 / 4e-84 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.010G104400 [exp] 243 / 3e-81 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.002G183600 [exp] 157 / 9e-47 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G104400 [exp] 42 / 0.0002 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014074 pacid=23156775 polypeptide=Lus10014074 locus=Lus10014074.g ID=Lus10014074.BGIv1.0 annot-version=v1.0 ATGGCTGAGCAACAGCAATCAGGGGAGAATGTCAGCAGGCATCAGGAAGTTGGTCACAAGAGTCTCCTCCAGAGCGATGATCTTTACCAGTATATTCTCG AGACGAGCGTTTACCCGAGGGAGCCGGAGTCGATGAAGGAACTCCGGGAGGTCACCGCCAAACACCCCTGGAATATCATGACTACGTCTGCCGACGAAGG ACAGTTCCTCAACATGCTACTGAAGCTCATCAATGCTAAGAACACAATGGAGATCGGCGTCTACACCGGCTACTCCCTTCTCGCCACCGCCCTCGCTCTC CCCGACGACGGAAAGATCTTGGCAATGGATATCAACAGAGAGAACTACGAAATCGGCCTGCCAATCATCGAGAAAGCCGGACTTGCTCACAAGATCGAGT TCAAAGAAGGCCCTGCACTGCCCGCTCTTGACAAGATGGTCGAAGACAAAGCGAACCACGGAGCGTACGACTTCATATTTGTGGACGCGGACAAGGACAA CTACATCAACTACCACAAGAGGCTGATCGACTTGGTGAAGGTCGGTGGAGTCATCGGGTACGACAACACCCTATGGAACGGGTCCGTGGTTGCGCCTCCT GATGCGCCGTTGAGGAAGTACGTCAGGTATTACAGGGACTTCGTTTTGGAGCTGAACAAGGCGCTCGCTGCTGACCCGAGAATCGAGATCTGCATGCTCC CCGTTGGAGACGGAATCACTCTCTGCCGCCGGATCAGCTAA
AA sequence Show only first row Show all	>Lus10014074 pacid=23156775 polypeptide=Lus10014074 locus=Lus10014074.g ID=Lus10014074.BGIv1.0 annot-version=v1.0 MAEQQQSGENVSRHQEVGHKSLLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAL PDDGKILAMDINRENYEIGLPIIEKAGLAHKIEFKEGPALPALDKMVEDKANHGAYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPP DAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	0	1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	1.4	0.9497
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	2.4	0.9200
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	2.4	0.9371
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10024068 [exp]	3.5	0.9383
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	3.5	0.9036
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	4.5	0.9360
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	5.0	0.9229
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	6.9	0.8986
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	7.3	0.9135
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	7.5	0.9179

Compare expression of checked genes

Lus10014074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.