Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34100 1546 / 0 RING/U-box superfamily protein (.1.2) AT4G32670 238 / 1e-64 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G19370 175 / 9e-45 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT2G23360 117 / 5e-26 Plant protein of unknown function (DUF869) (.1) AT1G19835 86 / 1e-16 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 82 / 3e-15 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 81 / 6e-15 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019839 [exp] 3224 / 0 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10004994 [exp] 137 / 3e-32 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10024324 [exp] 83 / 2e-15 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 81 / 8e-15 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 81 / 8e-15 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 78 / 3e-14 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 78 / 8e-14 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034510 [exp] 56 / 3e-07 AT1G19835 343 / 5e-108 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 54 / 2e-06 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099400 [exp] 1600 / 0 AT4G34100 1607 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G304100 [exp] 1543 / 0 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G099500 [exp] 250 / 2e-68 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 248 / 9e-68 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 188 / 5e-48 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.005G140300 [exp] 185 / 6e-47 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.002G024400 [exp] 82 / 4e-15 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 82 / 4e-15 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 71 / 6e-12 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 53 / 2e-06 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10014076 pacid=23156786 polypeptide=Lus10014076 locus=Lus10014076.g ID=Lus10014076.BGIv1.0 annot-version=v1.0 ATGGAGATCGACCCCGCAGCATCGCCATCGAACAGCGGTGAGGCCGGGTTACCGCTGCCTTCTCCGTCGGTGTCCTCGAATTCGGGCTCTTCTTCGTCCG GCAATCCCGATTCGATCGGGAAGGATGAAGGCGGCGATAGGAACGGAATTTCCTTAGGAGCGGAATTTCCTCATCGTCTTCGTCCGTATCGGCAGTGGCG GCGAGGTACGATGATGATGATGACGAGGAAGGGGACGTCTGCAGGATCTGTCTGCAAACATCCATTCTCCTTCTCTCCTGTCTATGCTGAAAATGCTCCA TCGAGGCTTCCTTTTCAAGAATTTCTAGTTGGAATGGGGATGAAGGCATGCCATGTGATGCAATTCTTTTTGCGCCTTAGTTTTGTGCTCTCTGTTTGGC TCCTAATTATACCTTTCATAACATTTTGGATATGGCGTCTGGCCTTCCTGAGAAGTTTTGGTGAAGCCCAGAGGTTGTTCTTGAGTCATGTCTCGACTAC GGTTATTCTCACTGATTGTCTGCACGGGTTCCTGCTCTCTGCCAGCATTGTGTTCATTTTTCTTGGAGCAACCTCTCTGAGAGATTACTTTCGTCATTTA AGAGAGATTGGTGGACAGGAAGTTGAGAGAGAAGAAGATGAAGGGGATAGAAACGGTGCCCGTATACCAAGGCGGCCTCTGGTACAGGAAAACAGAAATT TTGCTGGTGAGCCAAATGTTGAGGATGTCGGGGATGTGGGAGCACAAGGAATTGCTGGTGCTGGTCAACTAATCAGAAGAAATGCAGAAAACGTTGCTGC TCAGTGGGAGATGCGAGCGGCTCGACTTGAAGCTCACGTTGAACAGATGTTTGATGGTTTAGAAGACGCTGATGGTGCTGAGGACGTTCCTTTTGATGAA CTTGTCGGGATGCAGGGTCCTGTTTTCCATTTGGTTGAAAATGCATTTACGGTTCTTGCAAGCAACATGATATTCCTTGGAGTTGTGATCTTTGTTCCCT TTTCGTTGGGACGGATTATACTTTACTACATATCTTGGCTTTTCTCTTCTGCTAGGGGTCCTGTACTGTCAACTGTTGCAACACTGAATGAATCTGGCCT CGCCCTTGCAAATATCACCCTGAAGAATGCATTAACAGCTGTGAGTAATTTGACATCTGAGCCCCATGATGGTGGCCATTTGAGCCATGTAGCTGAGACT GTTGGAGTAAATGCTAGTGGATTACATGAGGCCTCCAGCAATATAAGTACTTCGCTCGCGGGCGATCTCTTAGAAGGGGCTACGATCGGTACTTCTCGGC TTTCAGATGTTACAACCCTTGCTATTGGCTATATGCTAATAGGCTTCCTAGTTTTCCTTTACCTTGGTGTTGTTGCTTTGATTCGGTACACTAAGGGGGA GCCGTTGACCATGGGAAGGTTCTATGGTATTGCTTCATTAGCAGAGACAATTCCCTCACTCTTCAGGCAATCCTTGGCAGCAATGAGGCATCTCATGACT ATGATTAAAGTTGCCTTCCTTCTAGTAATTGAACTTGGGGTCTTTCCTCTGATGTGTGGCTGGTGGCTTGACGTCTGTACCATAAGGATGTTCGGAAAGT CTATGTCTCAACGAATTCAATTCTTCTCAGCTTCCCCACTGGCTAGCTCTTTGATTCACTGGGTGGTGGGAATCGTCTACATGCTACAGATAAGCATCTT TGTCAGCCTTCTCCGAGGGGTTTTGCGTCGTGGAGTTCTTTATTTTCTGCGAGATCCTGCTGATCCAAACTACAATCCCTTCCGTGATTTAATTGATGAT CCTGTGCACAAGCATGCTCGAAGGGTTCTGTTGTCTGTTGTTGTGTATGGGAGCTTGATTGTTTTGCTGGTATTTTTACCTGTCAAACTTACAATGCGAA TGGCCCCATCCATCTTTCCACTAGACATATCGGTGTCTGATCCATTCACGGAAATTCCAGCTGATATGCTTCTATTTCAAATTTGCATCCCATTCGCTGT TGAGCATTTTAAGCTGCGGACCACAATCAAGTCTCTCCTTCGTTATTGGTTTACAGCTGTTGGGTGGGCGCTTGGTTTGTCCTACTATTTATTGCCTAGA CCTGGTGATGATAATGGTGGCCAAGAAAATGGCAATGTAGAACCTGGAAGGCAGGATCAGTTACAGGCTGTGCAATTGGGGGGCCATGACCGTGCTCTGG CAGTAGCAGCTGTTGATGATCCCAACAGAGGAATTCCTGCAGCTGGGAATTTAAATGTTGTGGAGGAAGATGAGAATGATGATCAATCTGATTCTGGGTC TAGTTTTATTTTCCGGATCGTGCTCTTGTTGGTGATAGCGTGGATGACGCTTCTGGTCTTCAACTCTGCTTTGATCATTATACCCGTGTCACTTGGTCGT TCCCTTTTCAATGCCATTCCTCTTCTCCCGATAACACACGGCATCAAATGCAATGATCTATACGCTTTTATTATCGGAAGCTACGCCATTTGGACCACTC TGGCTGGAGCTAGATATTGTTTGGAGCATGTGAGAACAAAGAGAGCAGCAGTGTTGTTTAATCAGATCCGGAAATGGTGTGGCATTGTTCTCAAGAGTAC CGCGCTACTTTCAATATGGGTTTTTGTCATTCCGGTGATGATTGGTCTGTTGTTTGAGCTTCTGGTGATTGTTCCGATGCGGGTGCCTGTCGACGAAAGT CCAGTCTTTCTCTTGTATCAAGACTGGGCATTGGGACTGATCTTCCTTAAGATCTGGACCAGACTGGTCATGCTGGATCACATGATGCCACTCGTCGATG AAACCTGGCGCATAAAATTCGAGAGGGTGCGGGAAGATGGCTTCTCACGGCTTCAAGGTCTTTGGGTGCTGCGTGAGATCGTGTTCCCGATTGTGATGAA GCTACTAACCGCCCTGTGCGTGCCCTACGTCCTGGCAAGAGGAGTATTCCCCGTATTTGGCTACCCATTAGTCGTTAACTCCGCAGTCTACAGGTTCGCC TGGCTGGGATGCCTCTCCCTCAGCGTATTCTGCTTCTGCGCCAAGAGGTTCCACGTCTGGTTCACCAACCTCCACAACTCTATCCGGGACGATCGGTACC TCATCGGCCGCAGGCTCCATAACTTCGGAGAGCACACCGTGGCGGCAAAGCAGGAAGACGAGGCGGGGTCTTCAGAGGAAGCAGAGAGCTCAGGTAACAG CATGTTCGGTAATGAGAGAGAAGCTGAAGTGGGGTTGAGATTGAGAAAACAACCTTATCTCCCCCATTCTTTACCATGCTTTGGTCTCTGCGGAAATATT GAAGGACTTCAAGTTCTTGATACTGCATTGGCTTTGAGAGCTGATATTGTTATGGACAACAATCCATGGCTGTGGAAGAGGAGTTTTGCACAGAGAACAG TCAACGTTGCAGCAAAAAACCATGGCAGTCCTGGGATATTAAGAGTTCCTTGTGAAGAGTCGAGGAAGATTCCCAAGACTGTAGCTTTACCTTCCAAAAT TGTGAAGAACCTGAATGAGAAGCTCGCTTCAGTGATTCTTGATGATCAGCTGGCCAAACATGATGACTTTCTTGTACAACATGAGAATGAATTCTCTGCA GGCTTGGAGAAGGAAGAAGAAGAAGAGATTTTCTTGAAAAAGGAACTTACTGAGGAGGATCTAAGGCAGGGAGTACCAGCAAGGAAATCTCATCCGGATG CTTCAACGAAGCATTTCATGTGGCAGTTGAGCCCCATCCCTGAAGAACAAGAGCTGAAGACGGAACACGAAGCTACTACTGGTACACATCCATCGCCCGA GCACGAAGATTTAGAGAAGAATAAGTTGACCGACACGAGCAAAAGGCTCGCAAATTTAGTGATCGAGAACACGAAATTGAGCAGGAGTTTAATGTTGAAA GAGGAATTGGTTGACGAACTGCATAAGCAAGCATCTCAGAGATCGGCAGAGTTCAACGCACTGATGTCGAGATTGGACACCACGGAGAAAGAGAATGCAT TTCTAAAGTACGAGTTCCACATGCTCGAGAAAGAGATCGAGGTATGTAACGAAGAACTAATGTACAGTCGCCAGTCTGCCGATGCGACCAGAATGCAGCA CCTGGAATGCGTGAAGACGGTTGCCAAGCTGGAAGCGGAATGCCAGATGCTTCGTAGCAGCTCGACACGAAAGGGGCAGAATCGGAATTTCCTGTTGGAA GAGAACAGGAATCTTAAGGAGACACTGAGGAAGAAGAATGCAGAACTTCATTCTTCTCGCGGAATGTTCTCAAGAGCAGCCTCGAGGCTGTCACAGGCCG AAGCTCAACTGGCAGAACTTTCGAGGAAGGGTGCGAAGGCTATGGAGCCGGTGAAGTACAGTTCCGACATTTGCAGCGACGATGGAGTTAGCTCTTCTTC GGGGTCGTGGGCTAATGCTCTACTTTCAGAACTGGAACATTTCAGATATGGTAAAGTCAACAGTCAACGACAAGACTGCAAAGCGATCGGAAGCTTGGAC ATGAGTCTGATGGATGACTTTGTCGAGATGGAAAAATTCGCCATCGTTTCAGTTGGTGACGATTCCTCCATGAAAAATGTTACTAGTGGTGATGATGATG GTGATAGTCAAGACTTTGACTGGCTTCAGGTTGTTTTGAAGGCACTGATGAAGCAACAGCGGGTTTCGAATCGTAGCCTGCCTGAACTTCTCGAGGATAT CAAGATCGCTATTGGCGAGGAATGTGTTCATTTATCTAACATGGTCCAAGAGAATAAGAGACTGAAAGATGAGCTACAGTCGGAAACTGAGAAGGCCGAG GCTTTGGTGAAAGAAGCTCGAGACTTGAGAACGGAATTAGAAACTATAAGAGATGAGAAGGCCATGATTGAGGACCAGATGGAGAACCAGAAGTCAATGA ATGAGGATCTTGACACTCAGCTTACTGTGGCCAGATCCAAGCTGAATGAGATCATGCAGAAGTATTCATGCCTCGAGGTTGAATTGGAGGATAAGAACGA CTGCTGCGAAGAGCTAGAATCGACGTGTCTCGACCTTCAACTCCAACTGGAAAGTGTGGGAAGCAGTGAAACTATGAACAATGCCATCAGTGAAGAAGAA AAGCAATCATCCCAAAACGGATGGGAGATCACGGCAGCCTCTGCGAAGCTAGCCGAATGTCAAGAAACCATCTTGAACCTCGGGAAACAACTAAAGGCAT TGGCTTCACCGCGTGAAGCTGCACTTTTCGACAAGGTTTTCAATGCGACCAACGGCACAGACATTGTCACCACCACCAACAACAACAGGAACATCTACAG GCACTTCTCGTTACACGATCAGATGGTCGCTGAAGACAAAGCTAAAGCAATCATACTATACTCTCCCAAGGAAGATTCGGTGCGAAAATATGCAGACCAG CGTGATGAAGCGAAGGGAGCTGCAGAATGTGATAATAATAAAACGGCAGATATGACACTGGTCATTGTACCTACTAAACGACAGGCCGGAATCGGGTTTT GGAAGAAGCTACTAATGAGGAGGAAGAAAGGAGGAAGCAAGAAGTCTCAGTCTTTGGTAAAAGTATAA
AA sequence Show only first row Show all	>Lus10014076 pacid=23156786 polypeptide=Lus10014076 locus=Lus10014076.g ID=Lus10014076.BGIv1.0 annot-version=v1.0 MEIDPAASPSNSGEAGLPLPSPSVSSNSGSSSSGNPDSIGKDEGGDRNGISLGAEFPHRLRPYRQWRRGTMMMMTRKGTSAGSVCKHPFSFSPVYAENAP SRLPFQEFLVGMGMKACHVMQFFLRLSFVLSVWLLIIPFITFWIWRLAFLRSFGEAQRLFLSHVSTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHL REIGGQEVEREEDEGDRNGARIPRRPLVQENRNFAGEPNVEDVGDVGAQGIAGAGQLIRRNAENVAAQWEMRAARLEAHVEQMFDGLEDADGAEDVPFDE LVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILYYISWLFSSARGPVLSTVATLNESGLALANITLKNALTAVSNLTSEPHDGGHLSHVAET VGVNASGLHEASSNISTSLAGDLLEGATIGTSRLSDVTTLAIGYMLIGFLVFLYLGVVALIRYTKGEPLTMGRFYGIASLAETIPSLFRQSLAAMRHLMT MIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMSQRIQFFSASPLASSLIHWVVGIVYMLQISIFVSLLRGVLRRGVLYFLRDPADPNYNPFRDLIDD PVHKHARRVLLSVVVYGSLIVLLVFLPVKLTMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRTTIKSLLRYWFTAVGWALGLSYYLLPR PGDDNGGQENGNVEPGRQDQLQAVQLGGHDRALAVAAVDDPNRGIPAAGNLNVVEEDENDDQSDSGSSFIFRIVLLLVIAWMTLLVFNSALIIIPVSLGR SLFNAIPLLPITHGIKCNDLYAFIIGSYAIWTTLAGARYCLEHVRTKRAAVLFNQIRKWCGIVLKSTALLSIWVFVIPVMIGLLFELLVIVPMRVPVDES PVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDETWRIKFERVREDGFSRLQGLWVLREIVFPIVMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFA WLGCLSLSVFCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHTVAAKQEDEAGSSEEAESSGNSMFGNEREAEVGLRLRKQPYLPHSLPCFGLCGNI EGLQVLDTALALRADIVMDNNPWLWKRSFAQRTVNVAAKNHGSPGILRVPCEESRKIPKTVALPSKIVKNLNEKLASVILDDQLAKHDDFLVQHENEFSA GLEKEEEEEIFLKKELTEEDLRQGVPARKSHPDASTKHFMWQLSPIPEEQELKTEHEATTGTHPSPEHEDLEKNKLTDTSKRLANLVIENTKLSRSLMLK EELVDELHKQASQRSAEFNALMSRLDTTEKENAFLKYEFHMLEKEIEVCNEELMYSRQSADATRMQHLECVKTVAKLEAECQMLRSSSTRKGQNRNFLLE ENRNLKETLRKKNAELHSSRGMFSRAASRLSQAEAQLAELSRKGAKAMEPVKYSSDICSDDGVSSSSGSWANALLSELEHFRYGKVNSQRQDCKAIGSLD MSLMDDFVEMEKFAIVSVGDDSSMKNVTSGDDDGDSQDFDWLQVVLKALMKQQRVSNRSLPELLEDIKIAIGEECVHLSNMVQENKRLKDELQSETEKAE ALVKEARDLRTELETIRDEKAMIEDQMENQKSMNEDLDTQLTVARSKLNEIMQKYSCLEVELEDKNDCCEELESTCLDLQLQLESVGSSETMNNAISEEE KQSSQNGWEITAASAKLAECQETILNLGKQLKALASPREAALFDKVFNATNGTDIVTTTNNNRNIYRHFSLHDQMVAEDKAKAIILYSPKEDSVRKYADQ RDEAKGAAECDNNKTADMTLVIVPTKRQAGIGFWKKLLMRRKKGGSKKSQSLVKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34100			RING/U-box superfamily protein...		Lus10014076 [exp]	0	1
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	3.3	0.8919
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	5.8	0.8837
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	7.4	0.8530
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	8.4	0.8569
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	10.2	0.8721
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	10.5	0.8584
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	10.6	0.8711
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	11.2	0.8578
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10025995 [exp]	12.0	0.8512
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	14.1	0.8567

Compare expression of checked genes

Lus10014076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.