Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 75 / 9e-16 HXXXD-type acyl-transferase family protein (.1) AT1G03940 75 / 9e-16 HXXXD-type acyl-transferase family protein (.1) AT3G29635 64 / 7e-12 HXXXD-type acyl-transferase family protein (.1) AT5G39080 59 / 2e-10 HXXXD-type acyl-transferase family protein (.1) AT5G39090 59 / 3e-10 HXXXD-type acyl-transferase family protein (.1) AT5G61160 59 / 5e-10 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29670 57 / 1e-09 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39050 57 / 1e-09 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29720 53 / 2e-08 HXXXD-type acyl-transferase family protein (.1) AT3G29590 51 / 1e-07 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039745 [exp] 261 / 1e-85 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 127 / 2e-34 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 103 / 2e-25 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 96 / 5e-23 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 92 / 1e-21 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10012743 [exp] 87 / 3e-20 AT1G03940 165 / 7e-47 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 68 / 4e-13 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10041656 [exp] 64 / 1e-11 AT3G29590 242 / 6e-76 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 62 / 3e-11 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 98 / 1e-23 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 95 / 1e-22 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 80 / 3e-17 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G093800 [exp] 71 / 4e-14 AT5G39080 302 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 68 / 2e-13 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 64 / 5e-12 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 64 / 7e-12 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G096300 [exp] 64 / 1e-11 AT3G29670 311 / 1e-101 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 63 / 2e-11 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.001G395900 [exp] 62 / 5e-11 AT5G39050 299 / 1e-96 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10014077 pacid=23156811 polypeptide=Lus10014077 locus=Lus10014077.g ID=Lus10014077.BGIv1.0 annot-version=v1.0 ATGGGGAGAAGTGACTTGGGTCACCACCCCGTACATCCTCTACTCCCGAAACGACGCCGTTTCCTTCACCGTCGCCGAATCCACCGCCAGCCTCGACTTC CACCAAGCCGCGTCAACCCTCCCCCCACCGACATCTGTTTGCTCCACCTTCTTCTCCCCAAACTCCCTCCCCTTAAAACAAACCCCGACAGCGTCACCAC AGAATCAAAGATCTTGTCTTTAAAGGTCACTCTGTTTCCAAATTCTGGTTTCTGCATCGGATTCGAGTTCCGCCACGTGGCGGCTGACGGCTTAGCCTTC AACCACTTCGTCAAATCATGGGCGGAAATTTCCAAATCCGGCGCCGTTTTGGATGAATTCTTGAAATTGTCGATTTCGTCGCTGCCGTGTCACGACAAGG AGTTGATAGAGGAAAACAGAGTATTGGAGGATAAGTTTTTGGAAAATTTCTGGAGCTTCAAATCGCCTTGGGTAGGGGATGCACTTGAATGTCTCCTCAC CGATAAGATCCGTGCAACGTTCTCCATCTCCGGTGAGCAAATTTCGAGGATGAAAGCTTTGGTGAACGGTAATGGTGGGAAATTGAAGTTGTTGTCGCCG CTGGCGACAACTTTCACTGTGGCTAATGCTTTGATATAG
AA sequence Show only first row Show all	>Lus10014077 pacid=23156811 polypeptide=Lus10014077 locus=Lus10014077.g ID=Lus10014077.BGIv1.0 annot-version=v1.0 MGRSDLGHHPVHPLLPKRRRFLHRRRIHRQPRLPPSRVNPPPTDICLLHLLLPKLPPLKTNPDSVTTESKILSLKVTLFPNSGFCIGFEFRHVAADGLAF NHFVKSWAEISKSGAVLDEFLKLSISSLPCHDKELIEENRVLEDKFLENFWSFKSPWVGDALECLLTDKIRATFSISGEQISRMKALVNGNGGKLKLLSP LATTFTVANALI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	0	1
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	2.2	0.8743
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	2.8	0.8654
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	4.2	0.8587
AT1G11070			unknown protein		Lus10038307 [exp]	5.0	0.8597
AT1G28250			unknown protein		Lus10015429 [exp]	5.1	0.8160
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	5.7	0.8621
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	6.9	0.8382
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	7.7	0.8647
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	8.8	0.8385
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	9.9	0.8360

Compare expression of checked genes

Lus10014077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.