Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 367 / 4e-126 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 359 / 2e-123 zinc ion binding (.1.2) AT5G09630 261 / 7e-85 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 86 / 7e-19 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT1G06060 50 / 6e-07 LisH and RanBPM domains containing protein (.1) AT4G09300 47 / 5e-06 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019837 [exp] 498 / 1e-178 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 437 / 1e-153 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 428 / 2e-150 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10020487 [exp] 300 / 5e-100 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 90 / 2e-19 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 89 / 3e-19 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10007106 [exp] 85 / 4e-18 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10018464 [exp] 41 / 0.0007 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128600 [exp] 475 / 5e-169 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 473 / 6e-168 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 354 / 3e-121 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 349 / 3e-119 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 92 / 2e-20 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2) Potri.011G046200 [exp] 42 / 0.0003 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Lus10014078 pacid=23156857 polypeptide=Lus10014078 locus=Lus10014078.g ID=Lus10014078.BGIv1.0 annot-version=v1.0 ATGGATCTGAACCCTATTAAGGATGCATTCGATCGTGTTGCGAAGAAGCAGAAGCTGTCCAGTTCCAAAGCTCAAGAAGTGCTCGATCAGATTCTGAGAG AGATTGAAACGGCTTTAGGAAGCATACAATTCCAAGCGCACGAGTCCGGACCTTACTGTAAAGATGTGCTAACTGAAGTGAAGCAAAAGCTGCAGGAGGT TTCTCCCGTTACTCAGCTGGAAGGCACACAGAAGGAACTGAATGTAGCTTTGAGCAAGTACCCGAAGCAACTCGAGAGATCGTTCAATCCGGATATATCC AAGGCTTACAGAAACGTCGAATTCGACATCCCAACTGTAAACCAGATCATCGCAAGCCATTTCTACCGACAAGGTATGTTCGATATCGGTGATTGCTTCA TAAGTGAAGTCAAGGAACCGGACTGTGCCATTACAATGAGAGCACTCTTCTCGGAAATGTACTCATTGCTCGAGGCTCTGAAGGAGAGGAACTTAGGACC TGCATTGTCCTGGGTTTCTGCCAACTCAGCTAGGCTTAAAGAAAACGGGTCAGATCTCCAGCTCAAGCTTCATCAGTTGCAGTTTGTCGAAATCTTGCAG AATGGGAGCAGGAAGGAAGCTCTAAGTTACGCGAGAACTAACATTGCTCCGTTTGCTGCCAACCACTTTGCCGAACTCCAAAAGATCATGGCGTGTCTGC TATGGTCGGGGAAGCTGGATCGATCTCCATACGCCGAGCTATTATCGCCAGCGAATTGGAGGGCGGTGGCCAAAGAACTCACCACCCAATTCTGCAACCT ACTGGGGCAATCATCGGAGAGCCCACTTAGCGTAACCATAGCAGCAGGGTTCCAGGGGTTACCGCCACTGTTGACGTTCATGACGGGGGTGGGTTCTTGC GGGCACGTGCTGTGCAAGCAGTCGATAAATAAGATGTCGAAGAACAACACGAAGACGTTCAAGTGCCCTTACTGTCCGACTGATATTGAATCGACAAAGT GTAAACAACTCTACTTCTGA
AA sequence Show only first row Show all	>Lus10014078 pacid=23156857 polypeptide=Lus10014078 locus=Lus10014078.g ID=Lus10014078.BGIv1.0 annot-version=v1.0 MDLNPIKDAFDRVAKKQKLSSSKAQEVLDQILREIETALGSIQFQAHESGPYCKDVLTEVKQKLQEVSPVTQLEGTQKELNVALSKYPKQLERSFNPDIS KAYRNVEFDIPTVNQIIASHFYRQGMFDIGDCFISEVKEPDCAITMRALFSEMYSLLEALKERNLGPALSWVSANSARLKENGSDLQLKLHQLQFVEILQ NGSRKEALSYARTNIAPFAANHFAELQKIMACLLWSGKLDRSPYAELLSPANWRAVAKELTTQFCNLLGQSSESPLSVTIAAGFQGLPPLLTFMTGVGSC GHVLCKQSINKMSKNNTKTFKCPYCPTDIESTKCKQLYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22690			zinc ion binding (.1.2)		Lus10014078 [exp]	0	1
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	1.0	0.9685
AT4G09730		RH39	RH39 (.1)		Lus10018946 [exp]	2.4	0.9451
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	3.5	0.9544
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	4.2	0.9556
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	5.3	0.9604
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	6.9	0.9362
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026072 [exp]	7.3	0.9352
AT4G19160			unknown protein		Lus10025855 [exp]	11.0	0.9488
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10035771 [exp]	15.2	0.9071
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	17.7	0.9315

Compare expression of checked genes

Lus10014078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.