Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34131 458 / 1e-158 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15490 451 / 1e-155 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 449 / 6e-155 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34135 436 / 2e-149 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34138 426 / 9e-146 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36800 359 / 2e-119 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 356 / 3e-118 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 347 / 1e-114 UDP-Glycosyltransferase superfamily protein (.1) AT2G36790 341 / 1e-112 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36750 335 / 4e-110 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014082 [exp] 477 / 4e-166 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 465 / 2e-161 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019835 [exp] 461 / 3e-159 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014086 [exp] 437 / 1e-149 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019832 [exp] 435 / 5e-149 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 428 / 3e-146 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014084 [exp] 413 / 7e-141 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 397 / 9e-135 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10010239 [exp] 353 / 1e-116 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098966 [exp] 533 / 0 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 528 / 0 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 520 / 0 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 515 / 0 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 502 / 2e-175 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 498 / 4e-174 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302400 [exp] 479 / 2e-166 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 473 / 3e-164 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 453 / 2e-156 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.002G123700 [exp] 403 / 1e-136 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014079 pacid=23156768 polypeptide=Lus10014079 locus=Lus10014079.g ID=Lus10014079.BGIv1.0 annot-version=v1.0 ATGGCGGCTACAGAAGGCAAACGACTCAACATCTTCTTCTTCCCATTCATGGCGCACGGCCACACCATCCCGATGCTCGACATTGCAAATCTATTCATGA ATCGAGGCCACATTTCAACCATCATCACCACACCACTCAACGCTCCCTCGATTCTTAGCGCGATCAGCATACTAGGTGGTTCTGCTGGTGGTGGTTCAGT CGGCATCGACATCAAGGTCATTAAATTCCAGACTCCGGAAGGGGCAGAACTCCCCTCAGGATGCGAGAACACAGATTTCATCACTTCCAGGAAAATGGGT CCCGAATGGATCCCAAAGTTCTTCAAAGCCACCACGTTTCTCCGTCAGGAACTTGAATCTCTGCTTCAAGAGTCTCAACCGGATTGCCTTGTGGCAGACG CATTCTTCCCCTGGGCGACTGCCACAGCAGCGAAATTTGGAATTCCTAGGTTGGTTTTCCACGGAATGGGCTTCTTTGCTTTGTCTGTACTGGCGAGTTT AGCCACGGATGAGCCTCATCGGAAAGTTGGATCGGATTCTGAACCGTTCCTTGTGCCTAAACTTCCTGATGAGATTTTCCTGACAAGGAGGCAGTTGCCT GAAGCAGAGAAGGAAGAGGATGAATTCCTCGTTAGTTTTTTCAGGGATGCTAAGGAATCAGAGTGGAAAAGCTTTGGAGTGATAGTCAATAGCTTCTGCG AATTGGAACCGACTTATGTCGAGCATTACAGGAATACATTGGGGAGAAAAGCTTGGCACATTGGCCCTCTGTCACTATCAAGGCAAGCATATAGGGGAAA TGAGGATTCAATCGAAGCACACGATTGCCTGAAATGGCTCGACTGGAAAGCGCCGGATTCGGTCATCTACATATGCTTCGGAAGCATGGCGAATTTCGAA GGTTCTCAACTAAAGGAGATTGCAATGGCACTCGAATCTTGCGGCCAGCATTTCATCTGGATTGTCAGGAAAAACGACGACGACAAAGAAGATTGGTTAC CTGAAGGATTCGAGGAGAGGACCGAAGGTAGAGGCCTGGTAATCCGAGGTTGGGCGCCGCAAGTCCTGATCCTACAGCACCAGGCGATCGGAGGTTTTGT GACGCACTGCGGGTGGAATTCAACGCTGGAAGGAGTGACGGCCGGGGTTCCGATGGTGACCTGGCCGGTGTCGGCTGAGCAGTTCCTGAACGAGAAGCTG GTGACGGATGTGGTGAAGATTGGAGTTAGGGTTGGGGTGGAACAGGGGGCGAGTTACGGAGGTATCGTGAATAGTGACGCGATTGAGATGGCGGTGAGAA GATTGATGGTGGAAGACGAAGGTGAAGAGATGCGGCGGCGAGTGAAGATGCTGGGGAAGGCGGCGGCGGAAGCTGTTGAAGGAGGATCTTCGTGGAATGA TTTGGATAATCTGGTCCTCGAGCTTCAGTCCCTATCGCCGATGAATCGTTGTTCGTTGTTGTAA
AA sequence Show only first row Show all	>Lus10014079 pacid=23156768 polypeptide=Lus10014079 locus=Lus10014079.g ID=Lus10014079.BGIv1.0 annot-version=v1.0 MAATEGKRLNIFFFPFMAHGHTIPMLDIANLFMNRGHISTIITTPLNAPSILSAISILGGSAGGGSVGIDIKVIKFQTPEGAELPSGCENTDFITSRKMG PEWIPKFFKATTFLRQELESLLQESQPDCLVADAFFPWATATAAKFGIPRLVFHGMGFFALSVLASLATDEPHRKVGSDSEPFLVPKLPDEIFLTRRQLP EAEKEEDEFLVSFFRDAKESEWKSFGVIVNSFCELEPTYVEHYRNTLGRKAWHIGPLSLSRQAYRGNEDSIEAHDCLKWLDWKAPDSVIYICFGSMANFE GSQLKEIAMALESCGQHFIWIVRKNDDDKEDWLPEGFEERTEGRGLVIRGWAPQVLILQHQAIGGFVTHCGWNSTLEGVTAGVPMVTWPVSAEQFLNEKL VTDVVKIGVRVGVEQGASYGGIVNSDAIEMAVRRLMVEDEGEEMRRRVKMLGKAAAEAVEGGSSWNDLDNLVLELQSLSPMNRCSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	0	1
					Lus10012326 [exp]	5.0	0.6156
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	6.6	0.6722
AT3G47040			Glycosyl hydrolase family prot...		Lus10000391 [exp]	7.1	0.6983
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	8.8	0.6047
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	13.0	0.6648
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	19.3	0.5848
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	21.0	0.6015
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	22.0	0.6078
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	24.3	0.6018
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	29.7	0.5983

Compare expression of checked genes

Lus10014079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.