Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15480 308 / 6e-102 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 301 / 2e-99 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34138 291 / 5e-95 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT4G34131 288 / 5e-94 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 279 / 2e-90 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G36780 268 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 267 / 9e-86 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT3G53160 259 / 7e-83 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36790 259 / 1e-82 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36770 257 / 5e-82 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019835 [exp] 537 / 0 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 355 / 2e-120 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 335 / 1e-112 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014079 [exp] 301 / 6e-99 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019832 [exp] 292 / 2e-95 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 290 / 2e-94 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 280 / 1e-90 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 278 / 2e-90 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 278 / 2e-90 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G303700 [exp] 359 / 9e-122 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303000 [exp] 355 / 5e-120 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 355 / 5e-120 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 355 / 5e-120 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 351 / 2e-118 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 341 / 1e-114 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 333 / 1e-111 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 331 / 1e-110 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 316 / 6e-105 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.002G123700 [exp] 283 / 1e-91 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014080 pacid=23156843 polypeptide=Lus10014080 locus=Lus10014080.g ID=Lus10014080.BGIv1.0 annot-version=v1.0 ATGTATAAACTTCACGACTCTGTTTCATCGGATTCGGAAGCGTTCCTTGTGCCGGGTCTCCCCGACCCCGTTATGATGACCCGGAATCAGATGCCGGCGC ATGATAAACTACCTAGTGAAAGTTACTTAGGAAATGTAATGCAACAGATTGCTGACTCCGGTAAGCATAGTTACGGGTCGGTGAATAACACATTTCACGA GCTGGAACCAGCATATGCAGATCTGTATAAAGAGATTTTAGGGGAGAAGAAGAAGGTTTGGAGTATTGGCCCTGTTTCGCTGTGTAATAATGAAGTTAAA GACAGAGCAAACAGGGGAGGGAAAGAATCCTCCATCGACAAAGACTCTTTACTCCAATGGCTTGATTCGAAGCCTCCCAGATCCGTCGTCTACGTCTGCT TCGGAAGTTTAGCGAACTTCTCCGACTCGCAATTAAAAGAAATCGCCGCCGGGTTGGAATCTTCCGGGCATCAATTTATCTGGGTTGTGAGAAAGGGAGA AGAGATGGGAGAAAATTCCAATTGGCTACCGGAGGGATTCGAGGAGAGGACTGAAGGGAAGGGATTGATAATTCGGGGGTGGGCACCGCAGGTTGTGATT TTGGAACATAAATCGGTGGGTGGATTCGTGACGCACTGCGGATGGAACTCGACGATGGAAGGGATAGCGGCGGGGGTGCCGATGGTGACGTGGCCAGTGT CGGCGGAGCAGTTTTATAATGAAAAGTTTGTGACGGATATTCTGGGTGTCGGAGTTGGAGTAGGGGTTAAAGAGTGGACCATGTACGGGGGTGGTGTTGA AGAAGGGAAAGTGGCGGAGGCGGTGGTTAAGGTGATGTCGGAGTCAGCGGCGGCCGCGGAGATGAGGAGGAGAGTTGGGCAGTTGGGGAAGATGGCGGGG AGAGCTGTGGAGGAAGGCGGCTCGTCGTTTCGGAATTTGGGGGAGTTAATTGAGGAGGTGCAACGATGCCGTATAGATAAACGGCTTGCTACTGTCCAAC TTACAACAGTGTCCATCCGCCCTGAGTGA
AA sequence Show only first row Show all	>Lus10014080 pacid=23156843 polypeptide=Lus10014080 locus=Lus10014080.g ID=Lus10014080.BGIv1.0 annot-version=v1.0 MYKLHDSVSSDSEAFLVPGLPDPVMMTRNQMPAHDKLPSESYLGNVMQQIADSGKHSYGSVNNTFHELEPAYADLYKEILGEKKKVWSIGPVSLCNNEVK DRANRGGKESSIDKDSLLQWLDSKPPRSVVYVCFGSLANFSDSQLKEIAAGLESSGHQFIWVVRKGEEMGENSNWLPEGFEERTEGKGLIIRGWAPQVVI LEHKSVGGFVTHCGWNSTMEGIAAGVPMVTWPVSAEQFYNEKFVTDILGVGVGVGVKEWTMYGGGVEEGKVAEAVVKVMSESAAAAEMRRRVGQLGKMAG RAVEEGGSSFRNLGELIEEVQRCRIDKRLATVQLTTVSIRPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	0	1
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	7.1	0.9048
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	8.3	0.9020
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	9.8	0.9145
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	14.0	0.8851
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	17.4	0.8446
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	18.8	0.8325
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	19.6	0.8498
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10006487 [exp]	20.5	0.8709
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	21.2	0.8517
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	21.5	0.8426

Compare expression of checked genes

Lus10014080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.