Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 393 / 6e-133 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 387 / 1e-130 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 385 / 9e-130 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 381 / 2e-128 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34138 362 / 6e-121 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 326 / 1e-106 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 325 / 2e-106 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 322 / 2e-105 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 321 / 8e-105 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G36800 315 / 2e-102 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019831 [exp] 803 / 0 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019832 [exp] 572 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 568 / 0 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014086 [exp] 561 / 0 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 387 / 8e-131 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 374 / 4e-125 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10010239 [exp] 370 / 2e-123 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 361 / 9e-121 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 358 / 2e-119 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098400 [exp] 496 / 2e-173 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 481 / 2e-167 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 467 / 6e-162 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 436 / 4e-150 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 433 / 9e-149 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 430 / 2e-147 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 428 / 7e-147 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 427 / 2e-146 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 426 / 4e-146 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.002G123700 [exp] 381 / 3e-128 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014084 pacid=23156804 polypeptide=Lus10014084 locus=Lus10014084.g ID=Lus10014084.BGIv1.0 annot-version=v1.0 ATGAACTCACAGCACCAGCTCCACATCATCTTCCTCCCATTCATGGCTCACGGCCACATGATCCCACTCCTCGACATGGCTCGCCATTTCGCCCGTCACG GTGCCAAATCCACCATCATCACCACCCCACTCAACGCCCCGACCTTTTCCGACAAGGTAACGCGAGACGCCCGACTGGGTCTCCGGATCCAAACCCACAT CATTGAATTCGACCCTGTCGCAACCGGCCTGCCAGAGGGATGTGAGAACGTTAACTTGATCGAGTCCCCCGAGATGCTCTTCACGTTCTTCAAGTCCATG GACGCATTCCAAGAGCCGGTACGCGACCTCCTCGTGCAATGGCGACCTGATGCAATCGTGGCCGATTTCGCCTTCCACTGGGCCACCGAGACAGCCCACG GGTTGGGGATCCCGAGGCTGTTCTTCAACGGGACGGGGTCTTTTGCGATGTGTCTGTTCGAACGCCTCAAAGAGAGCGACCAGTACAAAAAAGTGGAGTC TGAATCCGACCCATTCTTCGTGGATATCGGGGTTTCGAACCTGTTTCAATTCACCAAAATGCAGCTCCCGCCTTGCTTGAAAGGGGAGGAGGTCGAGAGC CGGTTGGTCGAGTTTCGAGATAGAATCGAGGAATCGGAGGCCAAAAGCTATGGAGTTGTGGTGAATAGCTTCCACGAGCTCGAGGCAGAGTATGCAGAGT ACTACAGGAATGTGATTGGAAGAAAGGCATGGTTCCTTGGTCCAGTTTCACTTATTGACAATAATAATGTCATGGATCAAGCAGCCATTGATGGAGGCAA ATGTTTGAAATGGCTTGACTCGAAACAGCCGAATTCTGTTATCTACATATGCTTTGGAAGTATCTCCACCATGTCTGAAGCTCAGCTGTTGGAGATTGCT GCAGCAATCGAGGCATCAGGGCATGGATTCATCTGGGTGGTGAAGAAGCAAGAGCGGCTGCCTGAAGGGTTTGAGAAGAGAATGGAAGGGAAAGGGTTGG TAGTCAGAGAATGGGCGCCTCAGGTGCTGATACTTGATCATGAAGCCGTTGGTGGATTCATGACGCACTGTGGATGGAATTCCACGATGGAAGGTGTGGC TGCAGGGGTGCCGATGGTGACATGGCCAATCCAGGGAGAACAGTTTTTGAACGAAAAGTTGGTGACGGATGTTCTGAGGGTCGGTGTTGGAGTTGGGGCT CAGGAGTGGTCGAGGAAGGAGAGGAGGATTGTGTTGGGTAGGGAAGATATTGGGAAGGCTGTGAGGGAAGTGATGGTCAGTGAAGATGATCAAGAGATGA GAATGAGAGCTGCCGAGCTTAAAGAATTGGCTCGGAGGGCTAACGAGGAAGGTGGGTCGTCTTATTGTGATTTGAAATCGTTGTTGGAAGAACTGAGGTC TCTCAAAGACAAGATAAATTAA
AA sequence Show only first row Show all	>Lus10014084 pacid=23156804 polypeptide=Lus10014084 locus=Lus10014084.g ID=Lus10014084.BGIv1.0 annot-version=v1.0 MNSQHQLHIIFLPFMAHGHMIPLLDMARHFARHGAKSTIITTPLNAPTFSDKVTRDARLGLRIQTHIIEFDPVATGLPEGCENVNLIESPEMLFTFFKSM DAFQEPVRDLLVQWRPDAIVADFAFHWATETAHGLGIPRLFFNGTGSFAMCLFERLKESDQYKKVESESDPFFVDIGVSNLFQFTKMQLPPCLKGEEVES RLVEFRDRIEESEAKSYGVVVNSFHELEAEYAEYYRNVIGRKAWFLGPVSLIDNNNVMDQAAIDGGKCLKWLDSKQPNSVIYICFGSISTMSEAQLLEIA AAIEASGHGFIWVVKKQERLPEGFEKRMEGKGLVVREWAPQVLILDHEAVGGFMTHCGWNSTMEGVAAGVPMVTWPIQGEQFLNEKLVTDVLRVGVGVGA QEWSRKERRIVLGREDIGKAVREVMVSEDDQEMRMRAAELKELARRANEEGGSSYCDLKSLLEELRSLKDKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014084 [exp]	0	1
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10026125 [exp]	3.0	0.7585
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	4.0	0.7630
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	12.7	0.7888
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	16.7	0.6912
					Lus10000834 [exp]	17.7	0.7446
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019831 [exp]	24.5	0.6807
AT5G53590			SAUR-like auxin-responsive pro...		Lus10006820 [exp]	25.8	0.6544
AT5G20480		EFR	EF-TU receptor (.1)		Lus10024681 [exp]	27.3	0.7046
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	28.0	0.7436
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	35.7	0.7296

Compare expression of checked genes

Lus10014084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.