Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49750 190 / 4e-58 Leucine-rich repeat (LRR) family protein (.1) AT3G19320 179 / 6e-54 Leucine-rich repeat (LRR) family protein (.1) AT4G06744 135 / 4e-38 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 105 / 3e-26 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 98 / 8e-24 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 92 / 9e-22 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 91 / 2e-21 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 91 / 3e-21 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 88 / 2e-20 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT1G49490 86 / 2e-19 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019830 [exp] 345 / 2e-120 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10002828 [exp] 229 / 1e-74 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10027878 [exp] 229 / 5e-73 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10010049 [exp] 116 / 9e-31 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 100 / 2e-24 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 97 / 3e-23 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 92 / 1e-21 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 91 / 2e-21 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 84 / 9e-19 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098601 [exp] 214 / 2e-67 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.001G302500 [exp] 143 / 7e-41 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098700 [exp] 136 / 4e-38 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.014G024300 [exp] 131 / 2e-36 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 99 / 4e-24 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 96 / 6e-23 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 91 / 4e-21 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 89 / 1e-20 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 88 / 2e-20 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 86 / 9e-20 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014085 pacid=23156816 polypeptide=Lus10014085 locus=Lus10014085.g ID=Lus10014085.BGIv1.0 annot-version=v1.0 ATGTACTTGACATTCGCTAACAACCGATTCTCAGGCCAGATCCCGAGGAGCATCGGTAGGTGCGAGAACCTTCTCGAAGTGCTGCTCCTCAACAACCGAT TCTCGGGATGTTTGCCGACGGAGATAGGGAATCTAACCAAGGCGAGGATATTCGACGCCGGGAATAACAAACTCACCGGTCCGATTCCTCACTCGTTTGC TTGCCTAGCCGAGATGCGAGATCTGAATCTGGCTCGGAACAAGCTGTACGGCGCTGTACCGGAGAGCGTGTGCCAGCTGCCGAAGCTCACGAATCTGTCG CTGTCGTCGAACTACTTGACGCAGGTGGGGCCCGCCTGCAGAAAGCTGATCGATAGAAAGGTCCTGGATGTGAAGGATAACTGTATTCTGGATCTGCCGG GGCAGAAATCGGCGGAGGAATGCGGCAAGTTTTTCTCCGGGAGAACTAACTGCCCAAACGTGAAGACATTGATGAGCTACATCCCTTGTAAGAAAGGGGA GAATTCCGATCGGAAATTGGCGGCGGTGGATGAAGAATCGGTGCCGGCTCCGGTGTCGTTCGCGTACCTTGCGTTGAAGCCTCACAAGTTGAGATGA
AA sequence Show only first row Show all	>Lus10014085 pacid=23156816 polypeptide=Lus10014085 locus=Lus10014085.g ID=Lus10014085.BGIv1.0 annot-version=v1.0 MYLTFANNRFSGQIPRSIGRCENLLEVLLLNNRFSGCLPTEIGNLTKARIFDAGNNKLTGPIPHSFACLAEMRDLNLARNKLYGAVPESVCQLPKLTNLS LSSNYLTQVGPACRKLIDRKVLDVKDNCILDLPGQKSAEECGKFFSGRTNCPNVKTLMSYIPCKKGENSDRKLAAVDEESVPAPVSFAYLALKPHKLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10014085 [exp]	0	1
AT5G19760			Mitochondrial substrate carrie...		Lus10030361 [exp]	2.0	0.8676
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	7.1	0.8558
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	8.3	0.8455
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	12.5	0.8206
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	13.6	0.8271
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	14.7	0.8257
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	17.3	0.8190
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	18.9	0.8336
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	19.4	0.8243
AT3G19870			unknown protein		Lus10030556 [exp]	20.9	0.8331

Compare expression of checked genes

Lus10014085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.