Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 481 / 2e-167 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34131 474 / 1e-164 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 473 / 6e-164 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT2G15480 469 / 8e-163 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34138 455 / 7e-157 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 417 / 6e-142 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 404 / 6e-137 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 402 / 4e-136 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36760 397 / 5e-134 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36790 384 / 6e-129 UGT73C6 UDP-glucosyl transferase 73C6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019832 [exp] 792 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014083 [exp] 784 / 0 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10014084 [exp] 614 / 0 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 602 / 0 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014079 [exp] 438 / 2e-150 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019833 [exp] 429 / 5e-147 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 427 / 2e-146 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10019835 [exp] 428 / 4e-146 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10010239 [exp] 390 / 4e-131 AT2G15480 392 / 3e-132 UDP-glucosyl transferase 73B5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098400 [exp] 584 / 0 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 579 / 0 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 562 / 0 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 531 / 0 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 518 / 0 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 513 / 6e-180 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 511 / 3e-179 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 509 / 2e-178 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 501 / 5e-175 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.002G123700 [exp] 442 / 1e-151 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014086 pacid=23156814 polypeptide=Lus10014086 locus=Lus10014086.g ID=Lus10014086.BGIv1.0 annot-version=v1.0 ATGGAGTCAAAGCAGCTCCAGGTAGTCTTCTTCCCGTTCATGGCTCAGGGCCACATGATCCCACTCGTCGACATGGCACGCCTATTCGCCCGCCGTGGCG TCAAATCCACCATCATCACTACTCCACTCAACGCCCCGCTCTTTTCCGACAAGATCAAACGAGACGCGGATCAAGGTCTCCAAATCCAAACCCACATCAT CGACTTCCCTTTCCTCGAGGCTGGATTACCGGAAGGGTGCGAGAACGTCAACACAATCAAGTCCGCCGACATGCTCTTGCCATTCTTCATGTCCATGCAT GCTTTCAAGAAACCAGTTGAGGAGCTCCTCGAACTATGGAAACCGGACTGCTTCGTGGCCGACTTGTTCTTCCACTGGGGCACCGAATCTGCTCATAGTC TTGGGATTCCGAGGCTGTTCTTCAATGGAACGAGTTCGTTTGCAATCTGCTTGATGCATTGTTTCACCCGTCAAGAACCTTGGAAAGGCGTTGAGTCCGA TTCCGAGCCATTTGTCATGCCTGGTTTGCCGCACCGGATTGAATTCACCAAGTTGCAGCTTCCTCCTTTCTGGAAAGGTGAGGGGATTACCGAAGAATGG CTAGAAATGAGAGATCTGATCAACAAATCGGAGGAGAAGAGCTTCGGAGCTGTGGTGAATAGCTTCCACGAGCTCGAACCTGGCTACTCCGAACATTACA AGGAGGTGGTAGGGAGAAAAGCATGGTTCATTGGTCCACTGTCGCTAAGTAACAAAGACAGTACCTTGGAGAAAGCAGAAAGAGGGAAAACTGCAGCAAT TGATGGACACGAATGTTTAAGATGGCTAGACTGTAGAGAACCCCATTCGGTTCTCTACATTTGTTTCGGGAGCATGTCTGATATTCCGAATGCTCAGCTG TTTGAGATTGCTTCAGCTCTCGAGGCATCAGTGCAGGGATTCATTTGGGTAGTGAAAAAGGAGAATAGTAAAGAGAAGAAAGGAGAATGGTTGCCGGAAG GGTTTGAGGAAAGGATGGAAGGGAGAGGGTTGATCATAAGGGGATGGGCGCCACAGGTGTTGATACTTGATCACCAAGCGACCGGAGGGTTCATGACTCA CTGTGGATGGAACTCGACGCTCGAAGGTGTGGTTGCTGGTGTGCCAATGGTGACATGGCCACTTGGGGCGGAGCAGTTTTTAAATGGAAGGTTGGTGACG GATGTTCTGAGGGTTGGGGTTGGGATTGGGCCTCAGGAATGGTCGAGGAACGATAGGGAGATTATGGTGGGGAGGGAAGACATAGAGAGAGCAGTGAGGC AAGTAATGGTTGGTGAACATGCTGAAGAAATGAGAGAGCGGGCTATGGAGCTTAAGGTAAAAGCTGTGAAGGGTAATGAAGAAGGGGGGTCGTCTTACTC TGATTTGAAATCGTTGCTGAAGGAACTTGCATCTGTACGAGACAAGAAGGATGTTGATTTGTCAAGCTGCAAACTGTAA
AA sequence Show only first row Show all	>Lus10014086 pacid=23156814 polypeptide=Lus10014086 locus=Lus10014086.g ID=Lus10014086.BGIv1.0 annot-version=v1.0 MESKQLQVVFFPFMAQGHMIPLVDMARLFARRGVKSTIITTPLNAPLFSDKIKRDADQGLQIQTHIIDFPFLEAGLPEGCENVNTIKSADMLLPFFMSMH AFKKPVEELLELWKPDCFVADLFFHWGTESAHSLGIPRLFFNGTSSFAICLMHCFTRQEPWKGVESDSEPFVMPGLPHRIEFTKLQLPPFWKGEGITEEW LEMRDLINKSEEKSFGAVVNSFHELEPGYSEHYKEVVGRKAWFIGPLSLSNKDSTLEKAERGKTAAIDGHECLRWLDCREPHSVLYICFGSMSDIPNAQL FEIASALEASVQGFIWVVKKENSKEKKGEWLPEGFEERMEGRGLIIRGWAPQVLILDHQATGGFMTHCGWNSTLEGVVAGVPMVTWPLGAEQFLNGRLVT DVLRVGVGIGPQEWSRNDREIMVGREDIERAVRQVMVGEHAEEMRERAMELKVKAVKGNEEGGSSYSDLKSLLKELASVRDKKDVDLSSCKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014086 [exp]	0	1
AT4G30230			unknown protein		Lus10041416 [exp]	1.4	0.9396
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	2.4	0.9363
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	3.0	0.9338
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	4.6	0.9245
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	9.4	0.9117
AT5G52430			hydroxyproline-rich glycoprote...		Lus10032276 [exp]	10.2	0.9241
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	10.6	0.9270
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	10.8	0.9241
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10030927 [exp]	12.2	0.9259
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	13.0	0.9214

Compare expression of checked genes

Lus10014086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.