Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43060 600 / 0 Granulin repeat cysteine protease family protein (.1) AT1G47128 585 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 567 / 0 Granulin repeat cysteine protease family protein (.1) AT3G19400 432 / 3e-150 Cysteine proteinases superfamily protein (.1.2) AT4G36880 425 / 5e-147 CP1 cysteine proteinase1 (.1) AT1G09850 399 / 4e-136 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G35350 384 / 3e-131 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G50260 380 / 2e-129 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 368 / 6e-125 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT1G20850 365 / 1e-123 XCP2 xylem cysteine peptidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002827 [exp] 721 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 718 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 656 / 0 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 586 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10018735 [exp] 444 / 2e-153 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 382 / 4e-129 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10006542 [exp] 368 / 5e-125 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10042078 [exp] 363 / 6e-123 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10018083 [exp] 362 / 1e-122 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 662 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 654 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 593 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 458 / 4e-160 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 446 / 3e-155 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 397 / 2e-135 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 385 / 6e-132 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.012G090900 [exp] 382 / 3e-130 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087400 [exp] 377 / 2e-128 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087500 [exp] 370 / 1e-125 AT5G50260 530 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10014087 pacid=23156808 polypeptide=Lus10014087 locus=Lus10014087.g ID=Lus10014087.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCCTCTTCAACCTCCTTGTTCCTCCTCTCTTCCCTCCTTCTCTTAGCTGTTTCCTCCGCCCTAGACATGTCGATCATCGATTACGACGCCC AGCACAACGTTGGGACTCCGGTTGTTCGGAGCGAGAAGGAGCTACGTACGATGTACGAGAGGTGGTTGGTGACGAACCGTAAGAACTACAACGCTCTGGG AGAAAAAGAGAAGAGGTTCGAGATTTTCAAGGAGAATCTGAGGTTCGTCGACGAGCACAACTCCGTCGAGAGGAGTTACAAGGTTGGGCTGAACCGGTTC GCCGATCTGACCAACGAGGAGTATAGAACGAGGTATCTGGGGGTCGCGATGGACAGGACGAAGAAGGTCAACGGTTCTTCTTCGTCGCTGGCGGTTGGAG AGAGGTATTTGTTTAAGAAGGGCGATGACTTGCCGGCTAGCGTCGATTGGCGCGAGAAAGGAGCTGTTGCCCCGGTCAAAGATCAAGGACAGTGTGGGAG TTGCTGGGCCTTCTCAACTGTGGGAGCGGTAGAAGGAATCAACCAAATTGTGACTGGTGAGATGATTTCACTTTCTGAGCAGGAGCTTGTGGATTGCGAT ACTTCATATAACCAAGGTTGCAATGGAGGTCTCATGGACTACGCATTTGAGTTCATCATGAAGAATGGTGGTATTGATACCGAAGTTGATTACCCTTACA GGGCTGCTGATGATGTCTGTGATTCCAACAGGAAAAATGCCAAGGTCGTAACCATTGATGGGTACGAGGATGTTCCACAAAACGACGAGAGTTGCCTAAA GAAGGCTGTGGCAGGTCAGCCAGTCAGTGTCGCCATTGAAGCTGGCGGCAGGGCCTTCCAGCTCTACCAGTCGGGTGTTTTCACTGGTCAATGCGGGACA CAACTCGACCATGGCGTGGTTGCAGTTGGATACGGGACTGAGAATGGTGTCGACTACTGGATCGTGAGGAACTCGTGGGGGCCAGAATGGGGAGAGAAAG GGTACATCAAGATGGAGCGTAATGTTGCCAAGACCAAGACAGGGAAGTGTGGTATTGCGATGCAGGCTTCATACCCAACCAAGAAGGGACCAAACCCTCC TAACCCAGGTCCAACTCCACCAACCCCGGCTACTCCCCCACCTCCACCGAGCCCTGGATCTGTCTGCGACGACTACTACTCATGTCCCGCAAGCACCACT TGCTGCTGCGTTTATCAATACGGTAACTACTGCTTTGGATGGGGATGCTGCCCTCTTGAATCAGCAACTTGCTGCGATGACCACTACAGTTGCTGCCCTC ATGACTATCCAGTCTGCGACCTCAACGCTGGAACCTGCAGAATGAGCAAGGAGAATCCGTTTGGAGTGGCGACGATGAAGCGATTCCTGGCTAAAAGCTC CAGGCCTCAGTTGCAGAGGGTGGTTGCTACCAGCGCTTGA
AA sequence Show only first row Show all	>Lus10014087 pacid=23156808 polypeptide=Lus10014087 locus=Lus10014087.g ID=Lus10014087.BGIv1.0 annot-version=v1.0 MASSSSTSLFLLSSLLLLAVSSALDMSIIDYDAQHNVGTPVVRSEKELRTMYERWLVTNRKNYNALGEKEKRFEIFKENLRFVDEHNSVERSYKVGLNRF ADLTNEEYRTRYLGVAMDRTKKVNGSSSSLAVGERYLFKKGDDLPASVDWREKGAVAPVKDQGQCGSCWAFSTVGAVEGINQIVTGEMISLSEQELVDCD TSYNQGCNGGLMDYAFEFIMKNGGIDTEVDYPYRAADDVCDSNRKNAKVVTIDGYEDVPQNDESCLKKAVAGQPVSVAIEAGGRAFQLYQSGVFTGQCGT QLDHGVVAVGYGTENGVDYWIVRNSWGPEWGEKGYIKMERNVAKTKTGKCGIAMQASYPTKKGPNPPNPGPTPPTPATPPPPPSPGSVCDDYYSCPASTT CCCVYQYGNYCFGWGCCPLESATCCDDHYSCCPHDYPVCDLNAGTCRMSKENPFGVATMKRFLAKSSRPQLQRVVATSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43060			Granulin repeat cysteine prote...		Lus10014087 [exp]	0	1
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	3.6	0.9138
AT1G12050			fumarylacetoacetase, putative ...		Lus10010485 [exp]	4.7	0.9097
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	6.3	0.8793
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	9.8	0.9049
AT1G34110			Leucine-rich receptor-like pro...		Lus10000509 [exp]	11.2	0.8948
AT3G25600			Calcium-binding EF-hand family...		Lus10034405 [exp]	11.6	0.8545
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	17.2	0.9042
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	18.7	0.8869
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	18.7	0.8889
AT3G08910			DNAJ heat shock family protein...		Lus10005033 [exp]	21.0	0.8592

Compare expression of checked genes

Lus10014087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.