Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34160 303 / 1e-100 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 244 / 7e-78 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 238 / 1e-75 CYCD3;2 CYCLIN D3;2 (.1) AT2G22490 141 / 1e-38 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 140 / 2e-38 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 130 / 8e-35 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 124 / 2e-32 CYCD4;2 cyclin d4;2 (.1) AT4G03270 93 / 2e-21 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 93 / 5e-21 CYCD7;1 CYCLIN D7;1 (.1) AT4G37630 91 / 2e-20 CYCD5;1 cyclin d5;1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019825 [exp] 530 / 0 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 244 / 4e-78 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 240 / 2e-76 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10018739 [exp] 229 / 3e-72 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10027874 [exp] 228 / 2e-70 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10024796 [exp] 222 / 1e-69 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10002824 [exp] 186 / 2e-56 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1) Lus10029194 [exp] 142 / 3e-39 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 142 / 1e-38 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301800 [exp] 353 / 4e-120 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.009G097800 [exp] 332 / 3e-112 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.005G141900 [exp] 299 / 4e-99 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.007G048300 [exp] 281 / 2e-92 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.002G123000 [exp] 266 / 1e-86 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 265 / 5e-86 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.005G157800 [exp] 149 / 7e-42 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.002G103500 [exp] 146 / 2e-40 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 138 / 2e-37 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 131 / 4e-35 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014089 pacid=23156839 polypeptide=Lus10014089 locus=Lus10014089.g ID=Lus10014089.BGIv1.0 annot-version=v1.0 ATGCTCGACGACGATTCCCTTTACTGCGGGGAGGAAGAGAGATGGGACGACGACGACGGCCACAGCCAGGGAGAAGTTGTCGATTCCGACGACTCAAACT CACTCCCTAGTCTTTCTCCGGTTCTGCTGCTGGAACAGGACTTGTTCTATGAAGACGACGAGCTCCGCTCCCTCTTCGCCAAAGAAGAGACGCTCTCGGT TTCCGTCGTCGTCGACGGTGTCGTCTCTTCGGCTCGCCGGAGAGCGGTGGAATGGATGGTGAAAGTCAATGCCCGTTATGGATTTTCGAATCTCACCGCC GTGTTAGCCATTAACTACCTAGATCGGTTCCTTTCGACTCCTTGTTACCAGAAGGAGAAGCCATGGATGATCCAGCTTGTGGCAGTCACTTGCCTCTCCC TGGCTGCCAAAGTGGAGGAAACTCACGTCCCTCTTCTTCTTGACCTTCAGGTTGAAGATACAAAGTATGTATTTGAAGCGAAGACCATTCAGAGAATGGA GCTTCTAGTATTGTCGGCACTTGGGTGGAAGATGCATCCAGTGACTCCGATCTCATTTGTGGATCACATTGTGAGGAGACTTGGACTGAAGAGCAATGTT CATTGGGAGTTCCTAACCAGATGCCACAGTTTCCTAGTCTGCTTAGTCTCCGATTCAAGATCTGTCAGATATCAGCCATCAGTCCTGGCAACTGCAGCAA TGATGCACGTTATTGACCAGGTTGAGCACTTTAACCCCATTGACTATCAGACACAGCTACTCACTGTCCTCAACATCAGCAAGGAAAAGGTGAAGGAGTG TTATGAGGTGATAATGGAGGTGGTGGCTAGAAAGTGCATTAGGAAGAAGAGAAAGTACTACTATGAAGGAGAGGAGGGAGAGGAAGAAGAAGACGACGAG TTGTATCCAAGCAGTCCTAGCGGCGTGATTGATGCAGCTAATACCGATGCATTTAGCTGTGACAGCTCAAACGATTCTTGGGCAGTGGGAAATGGGTCAT TTTCATCATCTTCATCTCCACATCCACCACCGCCATTAGGAGAGCAGCAGCAGCAGCCACTGGTAAAGAAGAGCAGAACCCAAGATGACCAATGGGTCTT TGCTGGCCTCGTTGGGAGACCCAGTTAG
AA sequence Show only first row Show all	>Lus10014089 pacid=23156839 polypeptide=Lus10014089 locus=Lus10014089.g ID=Lus10014089.BGIv1.0 annot-version=v1.0 MLDDDSLYCGEEERWDDDDGHSQGEVVDSDDSNSLPSLSPVLLLEQDLFYEDDELRSLFAKEETLSVSVVVDGVVSSARRRAVEWMVKVNARYGFSNLTA VLAINYLDRFLSTPCYQKEKPWMIQLVAVTCLSLAAKVEETHVPLLLDLQVEDTKYVFEAKTIQRMELLVLSALGWKMHPVTPISFVDHIVRRLGLKSNV HWEFLTRCHSFLVCLVSDSRSVRYQPSVLATAAMMHVIDQVEHFNPIDYQTQLLTVLNISKEKVKECYEVIMEVVARKCIRKKRKYYYEGEEGEEEEDDE LYPSSPSGVIDAANTDAFSCDSSNDSWAVGNGSFSSSSSPHPPPPLGEQQQQPLVKKSRTQDDQWVFAGLVGRPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10014089 [exp]	0	1
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	6.6	0.9034
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	9.2	0.8472
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	10.2	0.8936
AT5G20950			Glycosyl hydrolase family prot...		Lus10010657 [exp]	14.4	0.8406
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	15.7	0.8874
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	16.5	0.8672
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	17.6	0.8786
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	18.5	0.8796
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	19.0	0.8465
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	25.0	0.8722

Compare expression of checked genes

Lus10014089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.