Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35220 331 / 1e-115 Cyclase family protein (.1) AT1G44542 331 / 2e-115 Cyclase family protein (.1) AT4G34180 328 / 1e-114 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027872 [exp] 321 / 3e-112 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10019822 [exp] 315 / 3e-109 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10014092 [exp] 302 / 5e-101 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10001508 [exp] 287 / 8e-98 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10031454 [exp] 285 / 6e-97 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10031453 [exp] 276 / 8e-94 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001509 [exp] 271 / 4e-92 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10019823 [exp] 139 / 2e-42 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301501 [exp] 334 / 1e-116 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.001G301600 [exp] 329 / 1e-114 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.009G097300 [exp] 323 / 2e-112 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.001G301700 [exp] 323 / 5e-112 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.009G097201 [exp] 294 / 5e-102 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10014091 pacid=23156807 polypeptide=Lus10014091 locus=Lus10014091.g ID=Lus10014091.BGIv1.0 annot-version=v1.0 ATGATCGCCCAACTCCTTATTCTCCTCTTCCTCCTCTGCTCCCCACTCCATTCACTCTCGGCTACCGCCGGCACAAGGATAATCGACGTTACCCACGGCT ATGAAGAGGAGATGCCGGCTTATGGGTTGGAGCAAGGAATGGGGAAATTTTTGCGGCTGATTGCCGACATGAAGAACGGATCCGACGCCAATATGTCGGA GTTCAAGATGTCGGTCCATTCCGGTACTCATCTGGACTCCCCGGCGCATTTTTACGACAACTACTTCGACTCCGGATTCGATGTCGATACCCTTGACTTG GAAGTCCTCAACGGTCCAGCCTTGTTGGTTGATGTTCCAAGGGACAGTAACATAACTGCTAAAGTGATGAAATCATTGCAAATCCCAAAGGGAACAAGGC GTGTGCTGTTCAGGACTCTAAACACTGATAGGCGCCTGATGTTCAAAAAGGAGTTCGATTCAAGCTTTGTAGGGTTCATGGCCGATGGGGCGCAGTGGCT GGTTGACAACACAGACATCAAGCTTGTTGGAGTTGACTATTTATCTGCAGCTGCTTTTGTCAACGCTGCCCCAACTCATCTTGCTTTCCTAAAGAACAGG GACATCATTCTTGTCGAAGCAATGAAGCTTGATAACGTTGAAGCTGGACTGTACAATGTTCATTGCTTACCTCTGAGGCTGGTTGGAGCTGAGGGATCAC CGGCGAGATGCATTCTCATCAAATGA
AA sequence Show only first row Show all	>Lus10014091 pacid=23156807 polypeptide=Lus10014091 locus=Lus10014091.g ID=Lus10014091.BGIv1.0 annot-version=v1.0 MIAQLLILLFLLCSPLHSLSATAGTRIIDVTHGYEEEMPAYGLEQGMGKFLRLIADMKNGSDANMSEFKMSVHSGTHLDSPAHFYDNYFDSGFDVDTLDL EVLNGPALLVDVPRDSNITAKVMKSLQIPKGTRRVLFRTLNTDRRLMFKKEFDSSFVGFMADGAQWLVDNTDIKLVGVDYLSAAAFVNAAPTHLAFLKNR DIILVEAMKLDNVEAGLYNVHCLPLRLVGAEGSPARCILIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	0	1
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	1.7	0.9258
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	2.0	0.9240
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	8.1	0.8962
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	9.5	0.9008
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	9.7	0.9185
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	11.2	0.9147
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	11.5	0.8984
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	13.0	0.9194
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	13.3	0.9232
AT1G03290			unknown protein		Lus10028005 [exp]	15.0	0.9098

Compare expression of checked genes

Lus10014091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.