Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35220 350 / 5e-119 Cyclase family protein (.1) AT4G34180 298 / 8e-99 Cyclase family protein (.1) AT1G44542 288 / 9e-95 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019822 [exp] 428 / 1e-149 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10027872 [exp] 301 / 5e-101 AT4G35220 310 / 8e-108 Cyclase family protein (.1) Lus10014091 [exp] 301 / 3e-100 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10031453 [exp] 277 / 2e-90 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001508 [exp] 276 / 6e-90 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10001509 [exp] 273 / 4e-89 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10031454 [exp] 271 / 3e-88 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10019823 [exp] 116 / 3e-31 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301501 [exp] 382 / 1e-131 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.001G301600 [exp] 359 / 1e-122 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301700 [exp] 346 / 1e-117 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.009G097300 [exp] 313 / 5e-105 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.009G097201 [exp] 276 / 2e-91 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10014092 pacid=23156756 polypeptide=Lus10014092 locus=Lus10014092.g ID=Lus10014092.BGIv1.0 annot-version=v1.0 ATGAACTCTTCAGTCATCTTCCTCTTAATCCTTTCCTTCTCGTCCCTCGCCGCGGCCTCCTCCTCCGCCACCTACCCGACCATCCCCGGGACAACAGAAA CCTCCTCCTTCTCCACCGAATCCGATCACCTAATCCCGGTCCGGCGGGAGGTATACGGCGACGGGAAGATCTTCGACATAACCCACAGGTACACGGCCGA CTCACCCGTCTGGGAAAGCGACGATGGTTTAGGTCAGTTCTTGTGGCTGCCCAAGAGTATGAAGAACGGGTCGCTAGCTAATTTTTCCGAGATAAAGCTC CCTTCACATACTGGAACTCACGTTGACGCCCCTGGACATGTGTTCGATCACTATTTTGATGCTGGGTTTGATGTCGATACTCTCGACTTGGAAGTTCTTA ATGGCCCTGCTCTGCTAGTTGATGTGCCCAGAGATACTAACCTTACTGGTGAAGCTATGAAGTCGTTAAACATACCCAAGGGTATCCGCCGCGTGCTTTT CAGGACGCTAAACACTGACAGGAAGCTTATGTTCAAAAAGCAATTTGACACGAGCTATGTTGGATTTACAAAGGATGGGGCTCAGTGGTTGGTAGACAAC ACTGACATCAAATTCGTTGGAGTTGATTATCTGTCTGTTGCTGCCTGGACCGATTTAATCCCAGCGCATCATGTTTTTCTACGTGGCAAGGAAATTATCC TTGTCGAAGCCTTGAAACTCGATGGCATCCAGCCAGGGCTACATTCAGTGCATTGCTTACCTCTTAGCCTAGCATCAGCCTGCGGAGGAGGCTCCGGTCG GAGATCCCTGCTTGCGGCGGTTGGAGGAGTGCCACAGGCGGAGAGGAGGGAGGTGTACTCGAACGGGCGACTGTTTGACATAACCCACCGGGTCAGCCCA AGCCTGCCGAGTTGGGGTTCAACTCAAGGGTTGGGTCAGTTCCTGAGGTTGGTGGTCAGTATCAAGAATGGATCTGATGTCAACGTGGCCGAGATCAAAT TCGGGACCCATACGGGGACGCACATTGATGCTCCCAGTCACTTTTACCAGGAGTACTATGATTCTGGTTACGATATCGACTCGCTCGACCTGGACATCCT CAACGCTAAAGTTATGCAGTCGTTGAGAATTCCAAAGGGGACAAAGCGTGTGCTGTTCAGAACTCTTAATACTGATAGGAAGCTAATGCATAAGAAGGAA TTCGATTCGAGCTACGTTGGGGTCGCAGCGGATGGGGCAAAGTGGATTGTGGAAAACACAGATATCAAGCTTGTTGGGCTGGATTACTTGTCGATTGCGA AATTCGAGGACGCAGACCCAACCCATCTCACTTTCCTGAAGAACAGGGATATAATACTGGTGGAAGGACTGAAACTTGACAACATTAGAGCTGGGCTCTA TGATGTTCATTGTCTGCCTATGAGGTTGCTTGGTGCTGATGGATCCCCAGCTAGATGCATTCTCATCAAATGA
AA sequence Show only first row Show all	>Lus10014092 pacid=23156756 polypeptide=Lus10014092 locus=Lus10014092.g ID=Lus10014092.BGIv1.0 annot-version=v1.0 MNSSVIFLLILSFSSLAAASSSATYPTIPGTTETSSFSTESDHLIPVRREVYGDGKIFDITHRYTADSPVWESDDGLGQFLWLPKSMKNGSLANFSEIKL PSHTGTHVDAPGHVFDHYFDAGFDVDTLDLEVLNGPALLVDVPRDTNLTGEAMKSLNIPKGIRRVLFRTLNTDRKLMFKKQFDTSYVGFTKDGAQWLVDN TDIKFVGVDYLSVAAWTDLIPAHHVFLRGKEIILVEALKLDGIQPGLHSVHCLPLSLASACGGGSGRRSLLAAVGGVPQAERREVYSNGRLFDITHRVSP SLPSWGSTQGLGQFLRLVVSIKNGSDVNVAEIKFGTHTGTHIDAPSHFYQEYYDSGYDIDSLDLDILNAKVMQSLRIPKGTKRVLFRTLNTDRKLMHKKE FDSSYVGVAADGAKWIVENTDIKLVGLDYLSIAKFEDADPTHLTFLKNRDIILVEGLKLDNIRAGLYDVHCLPMRLLGADGSPARCILIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	0	1
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	1.4	0.8796
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	1.7	0.8542
AT5G16550			unknown protein		Lus10003850 [exp]	2.8	0.8537
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	4.7	0.8597
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	4.9	0.8375
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	5.0	0.8438
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10040662 [exp]	5.2	0.8351
AT2G43250			unknown protein		Lus10040469 [exp]	5.9	0.8381
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10010328 [exp]	6.7	0.8192
AT5G10530			Concanavalin A-like lectin pro...		Lus10029554 [exp]	7.2	0.8209

Compare expression of checked genes

Lus10014092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.