Plant FIBer expression Database

Lus10014094 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19490 757 / 0 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
AT1G49810 544 / 0 ATNHD2 SODIUM:HYDROGEN ANTIPORTER 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019820
[exp]
940 / 0 AT3G19490 860 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G096700
[exp]
787 / 0 AT3G19490 687 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Potri.001G301000
[exp]
783 / 0 AT3G19490 694 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03600 CitMHS Citrate transporter
Representative CDS sequence
>Lus10014094 pacid=23156831 polypeptide=Lus10014094 locus=Lus10014094.g ID=Lus10014094.BGIv1.0 annot-version=v1.0
ATGGCGTCTTTCTCAATTGGGTCACACCACTTCAGCCCAGCGTCCCAATTCAAGAGACGGTCACTCCACCGTTCATTTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTTTGGATCTTCCAGCTGTAGATTTAGATGTCCAACACGGTTCGGGAGTGGGTTGCTCACCAGAGCTGAGGATAAGGCTAGGGACTC
TTCTTATTCGTCGCCAATTCAGCAGGACGTGACTGAAGAATTTGGGAACTGTGATCCTTTGTGTTCAGTTGATGAAACGAGTTCGGAACAGTATGAAGCC
AATTACCAGCCAAAGACTGATTTGTTGAAAGCTCTTGCAGTAGTTGGGGCAGCTGCAACTGGTGCAGTAGCAATTAACCACTCCTGGGTGGCTGCTAATC
AGGATCTTGCTATGGCATTGCTGTTTGGATTAGGATATGCTGGAATCATCTTTGAAGAGTCACTTGCTTTCAATAAAAGTGGGGTGGGATTGTTGATGGC
TGTCAGCTTATGGGCAGTTCGAAGTATTGGTGCTCCTTCAGTTGATATTGCTGTCTCAGAGCTCCATCAAGCATCAGGAGAAGTTAGTGAAATAGTATTT
TTCCTGCTTGGTGCGATGACAATTGTTGAGATTGTCGATGCTCATCAAGGATTTAAGCTAGTTACCGACAATATAACGACTCGAAAACCACGGGCTCTGC
TTTGGGTGATTGGCTTGGTGACCTTTTTCCTCAGTGCAATCCTTGATAACCTGACATCTACTATCGTCATGGTTTCTTTATTGAGGAAACTTGTTCCACC
ATCTGAATACCGCAAGATGTTAGGAGCGGTGGTTGTGATTGCAGCTAATGCTGGAGGCGCATGGACTCCAATTGGTGACGTTACAACCACAATGCTTTGG
ATCCATGGTCAGATAACCACATTGCCAACGATGAAGGACTTGTTTATACCTTCGGCTGTTTCTCTTGCCGTACCCCTTGCTCTTATGTCCCTGACCAGTG
AAGTTAACGGAAAAGGACAGGACAATGCCGATGTCTTAGCATCTGAACAGATGGCTCCTCGAGGAAAGCTTGTTTTCTCTATCGGTCTCGGAGCTTTGAT
CTTTGTTCCTGTGTTCAAGGCCCTAACCGGGTTGCCCCCTTACATGGGAATGCTTCTCGGGCTTGGAGTTCTCTGGATTGTCACAGATGCCATTCACTAT
GGTGAATCAGACAGCCAGAGGTTGAAAGTACCCCAGGCTTTATCTCGCATCGACACCCAAGGAGCCCTTTTCTTCCTCGGAATCCTTCTATCCGTTAGCA
GTTTGGAGTCAGCTGGGATTCTCCGAGAACTTGCAAACTATCTGGATGCTCATATACCGAACTTTGAGCTTGTGGCGAGTGCAGTTGGAGTCGTGTCAGC
AATCATTGACAATGTTCCCCTTGTTGCTGCGACGATGGGAATGTACGACCTGACCTCTTTCCCTCAAGATTCCGAGTTCTGGCAGTTGATCGCTTACTGC
GCTGGCACCGGTGGATCCATGCTGGTGATTGGCTCAGCGGCTGGAGTTGCATTCATGGGGATGGAGAAGGTGGATTTCTTCTGGTACTTGAAGAAGGTTA
GTGGTTTTGCTTTAGCTGGTTATGCTGCGGGAATTGCAGCATACTTGGCTGTTCATAACCTGAACATTTCTCTACCGACAACGTTGGCCGAGGTCCCGTT
CCTTTCCGGTTCGTGA
AA sequence
>Lus10014094 pacid=23156831 polypeptide=Lus10014094 locus=Lus10014094.g ID=Lus10014094.BGIv1.0 annot-version=v1.0
MASFSIGSHHFSPASQFKRRSLHRSFSSSSSSSSSSSSFGSSSCRFRCPTRFGSGLLTRAEDKARDSSYSSPIQQDVTEEFGNCDPLCSVDETSSEQYEA
NYQPKTDLLKALAVVGAAATGAVAINHSWVAANQDLAMALLFGLGYAGIIFEESLAFNKSGVGLLMAVSLWAVRSIGAPSVDIAVSELHQASGEVSEIVF
FLLGAMTIVEIVDAHQGFKLVTDNITTRKPRALLWVIGLVTFFLSAILDNLTSTIVMVSLLRKLVPPSEYRKMLGAVVVIAANAGGAWTPIGDVTTTMLW
IHGQITTLPTMKDLFIPSAVSLAVPLALMSLTSEVNGKGQDNADVLASEQMAPRGKLVFSIGLGALIFVPVFKALTGLPPYMGMLLGLGVLWIVTDAIHY
GESDSQRLKVPQALSRIDTQGALFFLGILLSVSSLESAGILRELANYLDAHIPNFELVASAVGVVSAIIDNVPLVAATMGMYDLTSFPQDSEFWQLIAYC
AGTGGSMLVIGSAAGVAFMGMEKVDFFWYLKKVSGFALAGYAAGIAAYLAVHNLNISLPTTLAEVPFLSGS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Lus10014094
[exp]
0 1
AT1G52510 alpha/beta-Hydrolases superfam... Lus10025787
[exp]
1.7 0.9438
AT4G18810 NAD(P)-binding Rossmann-fold s... Lus10029255
[exp]
2.0 0.9421
AT5G67030 NPQ2, LOS6, IBS... NON-PHOTOCHEMICAL QUENCHING 2,... Lus10009359
[exp]
2.8 0.9286
AT4G18810 NAD(P)-binding Rossmann-fold s... Lus10007308
[exp]
3.0 0.9309
AT1G67840 CSK chloroplast sensor kinase (.1.... Lus10006470
[exp]
5.8 0.8917
AT5G49740 ATFRO7, FRO7 ferric reduction oxidase 7 (.1... Lus10012160
[exp]
7.3 0.9059
AT1G67840 CSK chloroplast sensor kinase (.1.... Lus10011413
[exp]
7.5 0.8972
AT1G52510 alpha/beta-Hydrolases superfam... Lus10035875
[exp]
8.1 0.9168
AT5G35970 P-loop containing nucleoside t... Lus10024974
[exp]
8.5 0.9144
AT1G69450 Early-responsive to dehydratio... Lus10030431
[exp]
9.5 0.8916

Lus10014094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.